View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8966_low_18 (Length: 447)
Name: NF8966_low_18
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 5823751 - 5824165
Alignment:
| Q |
17 |
aagttgtaaacaattctttcatgaagaaccttttattacattcttaaaagcaatatcatgatttgtagtaaatatctttagcaataggatataaaatttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
5823751 |
aagttgtaaacaattctttcatgaagaaccttttatttcattcttgaaagcattatcatgatttgtagtaaatat-tttagcaataggacataaaatttt |
5823849 |
T |
|
| Q |
117 |
gctttactttttgtctcaaccctctgatttttaggagaattgaatgtcgataatttgaagttcaatacgaaaataagtaaagttctattaaagattgttt |
216 |
Q |
| |
|
| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
5823850 |
gttttacttttggtctcaaccctctaatttttaggagaattgaatgtcgataatttgaagttcaatctaaaaataagtaaagttctattaaagattattt |
5823949 |
T |
|
| Q |
217 |
cagttaggatttcatcaacaaaaattcttttgaatgatttatccatatttgaaactcattcactaaccatatgagttcaatcaattgattatagaatttt |
316 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5823950 |
ca-ttaggatttcatcaactcaaattcttttgaatgatttatccatatttgaaactcattcactaaccatatgaattcaatcaattgattatagaatttt |
5824048 |
T |
|
| Q |
317 |
aaaatgaaacataagcctatggtaaaagtgttagcaacaatctatctacaccatttccaaattaacaaccttttagaaattactcaaattttaatggtag |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5824049 |
aaaatgaaacctaagcctatggtaaaagtgttagcaacaacctatctacaccatttccaaattaacaaccttttcgaaattactcaaattttaatggtag |
5824148 |
T |
|
| Q |
417 |
atctaatatcttttgtct |
434 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
5824149 |
atctaat-tcttttgtct |
5824165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University