View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8966_low_19 (Length: 446)

Name: NF8966_low_19
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8966_low_19
NF8966_low_19
[»] chr7 (1 HSPs)
chr7 (1-435)||(29836361-29836795)
[»] chr3 (18 HSPs)
chr3 (227-439)||(10433957-10434169)
chr3 (227-405)||(10031947-10032125)
chr3 (145-439)||(10375758-10376058)
chr3 (229-396)||(10260644-10260811)
chr3 (229-405)||(10088736-10088912)
chr3 (227-439)||(10126872-10127084)
chr3 (229-405)||(10195619-10195795)
chr3 (227-435)||(11769178-11769386)
chr3 (227-405)||(10663470-10663648)
chr3 (227-396)||(9838805-9838974)
chr3 (227-396)||(9849683-9849852)
chr3 (234-439)||(10184193-10184398)
chr3 (229-396)||(10363754-10363921)
chr3 (227-405)||(10580545-10580723)
chr3 (225-371)||(11159998-11160144)
chr3 (340-396)||(10077326-10077382)
chr3 (325-405)||(11130973-11131053)
chr3 (325-405)||(11148801-11148881)
[»] chr2 (2 HSPs)
chr2 (145-396)||(26906753-26907010)
chr2 (34-106)||(26906642-26906714)
[»] chr4 (1 HSPs)
chr4 (259-396)||(17852900-17853037)
[»] chr6 (1 HSPs)
chr6 (149-382)||(31679703-31679942)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 29836361 - 29836795
Alignment:
Q  1 tcatctcttttttctaacaccaatggagaagtgaattcccaaataaagatatcttgtgaaagactgcagttctttgcccaacagaaagatatccttggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29836361 tcatctcttttttctaacaccaatggagaagtgaattcccaaataaagatatcttgtgaaagactgcagctctttgcccaacagaaagatatccttggct 29836460  T
Q  101 tgcaaagggtaagttcgaaggttttgtctcgaactcctacatcatcagtagtagatgaatatttcacggttggtaggaaggatgataaagaggaactagt 200  Q
    |||||| |||||||| |||||||||| || || |||||||| ||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  29836461 tgcaaacggtaagttggaaggttttgactggacctcctacaacattactagtaaatgaatatgtcacggttggtaggaaggatgataaagaggaactagt 29836560  T
Q  201 taatatgttgatatcagatacagacaataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  29836561 taatatgttgatatcagatacagacaataataatataggtgtagtcgcaattacaggcatgggaggtatcggtaaaacgaccctcgctcgacttatatac 29836660  T
Q  301 aaccagaaagaagttaaaaatcattttgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttg 400  Q
    |||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  29836661 aaccaggaagaagttaaaaatcattttgatgtacaagtctgggtttgtgtgtctgaagattttgatatgttgagagtaaccaaatctctccttgaagttg 29836760  T
Q  401 tcactaaaagatattgggattgcaataaccttgat 435  Q
    |||||  |||| | ||| ||  |||||||||||||    
T  29836761 tcacttcaagagaatggaataccaataaccttgat 29836795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 227 - 439
Target Start/End: Complemental strand, 10434169 - 10433957
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    ||||||| |||||||| || ||||||  ||||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||    
T  10434169 ataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattt 10434070  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcactaaaagatattgggattgcaat 426  Q
    |||| | || |||||||||||||||||| | |||||||||||||| | ||||||||| ||||||||||||   ||||||   |||  ||||||| |||||    
T  10434069 tgatttgaaggcctgggcttgtgtgtctcaggattttgatattttgaaagtaaccaagtctctccttgaatcggtcacttccagaacttgggatagcaat 10433970  T
Q  427 aaccttgatgtcc 439  Q
    || ||||||||||    
T  10433969 aatcttgatgtcc 10433957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 227 - 405
Target Start/End: Original strand, 10031947 - 10032125
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||||||||||||||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||    
T  10031947 ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt 10032046  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    |||| | || |||||||||||||||||||| |||||||||||| | |||||||| || ||||||||||||  |||||||    
T  10032047 tgatttgaaggcctgggcttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcact 10032125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 439
Target Start/End: Complemental strand, 10376058 - 10375758
Alignment:
Q  145 tcagtagtagatgaatatttcacggttggtaggaaggatgataaagaggaactagttaatatgttgatatcagatacagaca------ataataatatag 238  Q
    ||||| ||| |||||| | ||| ||| ||||||||||||||||||||     || | || |||||| ||||||| |||||||      ||||||||||||    
T  10376058 tcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagacactataatgaacatgttgctatcagagacagacacatcgcataataatatag 10375959  T
Q  239 gtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttgatgtaaaagc 338  Q
    |||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  |  || ||||| || | ||||||||| | || ||    
T  10375958 gtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggc 10375859  T
Q  339 ctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcactaaaagatattgggattgcaataaccttgatgtc 438  Q
     ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||   ||||||  ||||   |||||| ||||||| |||||||||    
T  10375858 atgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtc 10375759  T
Q  439 c 439  Q
    |    
T  10375758 c 10375758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 396
Target Start/End: Original strand, 10260644 - 10260811
Alignment:
Q  229 aataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttg 328  Q
    |||||||||||||| || ||||||   |||||||||||| | || ||||| |||||  |||||||| | |||||  | ||||||||| || | |||||||    
T  10260644 aataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttg 10260743  T
Q  329 atgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaa 396  Q
    |  | || || ||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||    
T  10260744 acatgaaggcgtgggcttgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaa 10260811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 405
Target Start/End: Original strand, 10088736 - 10088912
Alignment:
Q  229 aataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttg 328  Q
    |||||||||||||| || ||||||  ||||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||||    
T  10088736 aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttg 10088835  T
Q  329 atgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    || | || || |||| |||||||||||| |||||||||||| | |||||||| || ||||||||||||  |||||||    
T  10088836 atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcact 10088912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 439
Target Start/End: Original strand, 10126872 - 10127084
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||||||||||||||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||    
T  10126872 ataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt 10126971  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcactaaaagatattgggattgcaat 426  Q
    |||| | || || |||| |||||||||||| |||||||||||| | |||||||| || ||||||||||||  |||||||   | |  ||||||| |||||    
T  10126972 tgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttgggatagcaat 10127071  T
Q  427 aaccttgatgtcc 439  Q
    || ||||||||||    
T  10127072 aatcttgatgtcc 10127084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 405
Target Start/End: Original strand, 10195619 - 10195795
Alignment:
Q  229 aataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttg 328  Q
    |||||||||||||| || ||||||  ||||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||||    
T  10195619 aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttg 10195718  T
Q  329 atgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    || | || || |||| |||||||||||| |||||||||||| | |||||||| || ||||||||||||  |||||||    
T  10195719 atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcact 10195795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 435
Target Start/End: Original strand, 11769178 - 11769386
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||||||||||||||| || ||||||   |||||||||||| | || ||||| |||||  |||||||| | |||||  | ||||||||| || |  ||||    
T  11769178 ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtctacaatgataaagaagttcaacaatattt 11769277  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcactaaaagatattgggattgcaat 426  Q
    |||| | || || |||||||| |||||||| |||||||||||| | ||||||||||  ||||||||||||   ||||||  ||||  ||||||| |||||    
T  11769278 tgatttgaaggcatgggcttgcgtgtctgaggattttgatattatgagagtaaccaggtctctccttgaatcggtcacttcaagaacttgggatagcaat 11769377  T
Q  427 aaccttgat 435  Q
    || ||||||    
T  11769378 aatcttgat 11769386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 405
Target Start/End: Original strand, 10663470 - 10663648
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||||||||||||||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||    
T  10663470 ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt 10663569  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    |||| | || || |||| |||||||||||| |||||||||||| | |||||||| || ||||||||||||  |||||||    
T  10663570 tgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcact 10663648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 396
Target Start/End: Original strand, 9838805 - 9838974
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||| ||||||||||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  |  |||||||| || | |||||    
T  9838805 ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaacattt 9838904  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaa 396  Q
    |||| | |  || ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  9838905 tgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaa 9838974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 396
Target Start/End: Original strand, 9849683 - 9849852
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||| ||||||||||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  |  |||||||| || | |||||    
T  9849683 ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaacattt 9849782  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaa 396  Q
    |||| | |  || ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  9849783 tgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaa 9849852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 439
Target Start/End: Original strand, 10184193 - 10184398
Alignment:
Q  234 tataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttgatgta 333  Q
    ||||||||| || ||||||   |||||||||||| | || ||||| |||||  |||||||| | |||||  | ||||||||| || | ||||||||| |     
T  10184193 tataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttgatatg 10184292  T
Q  334 aaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcactaaaagatattgggattgcaataaccttg 433  Q
    |  || |||||||||||||| || |||||||||||| | ||||||||||| ||||||||||||  |||||||   | |  ||||||| ||||||| ||||    
T  10184293 agggcgtgggcttgtgtgtccgaggattttgatattatgagagtaaccaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttg 10184392  T
Q  434 atgtcc 439  Q
    ||||||    
T  10184393 atgtcc 10184398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 396
Target Start/End: Complemental strand, 10363921 - 10363754
Alignment:
Q  229 aataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttg 328  Q
    |||||||||||||| || ||||||  ||||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||||    
T  10363921 aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg 10363822  T
Q  329 atgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaa 396  Q
    || | || || |||| |||||| ||||| |||||||||||| | |||||||| || ||||||||||||    
T  10363821 atttgaaggcatgggtttgtgtctctgaggattttgatattatgagagtaacaaagtctctccttgaa 10363754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 405
Target Start/End: Original strand, 10580545 - 10580723
Alignment:
Q  227 ataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattt 326  Q
    |||||||||||||||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| || | |||||    
T  10580545 ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattt 10580644  T
Q  327 tgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    |||  | || || |||| |||||||||||| |||||||||||| | |||||||| || ||||||||||||  |||||||    
T  10580645 tgacatgaaggcgtgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcact 10580723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 11160144 - 11159998
Alignment:
Q  225 caataataatataggtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcat 324  Q
    |||||| |||||||| || || ||||||  ||| ||||||||| ||||||||||||| ||  | |||||| | |||||  |  || ||||| || |||||    
T  11160144 caataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaataatgaaaaagttcaagatcat 11160045  T
Q  325 tttgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttt 371  Q
    |||||| | ||||| ||||||||||| ||||| ||||||||||||||    
T  11160044 tttgatttcaaagcatgggcttgtgtatctgaggattttgatatttt 11159998  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 10077326 - 10077382
Alignment:
Q  340 tgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaa 396  Q
    ||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||    
T  10077326 tgggcttgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaa 10077382  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 405
Target Start/End: Complemental strand, 11131053 - 11130973
Alignment:
Q  325 tttgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    |||||| | ||||| ||||||||||| || || |||||||||||||| |||||||| ||| |||||||||||  |||||||    
T  11131053 tttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgtcact 11130973  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 405
Target Start/End: Complemental strand, 11148881 - 11148801
Alignment:
Q  325 tttgatgtaaaagcctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaagttgtcact 405  Q
    |||||| | ||||| ||||||||||| || || |||||||||||||| |||||||| ||| |||||||||||  |||||||    
T  11148881 tttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgtcact 11148801  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 396
Target Start/End: Original strand, 26906753 - 26907010
Alignment:
Q  145 tcagtagtagatgaatatttcacggttggtaggaaggatgataaagaggaactagttaatatgttgatatcagatacagaca------ataataatatag 238  Q
    ||||| ||| |||||| | ||| ||| |||||||||||||| ||||||  | || | ||||||||| ||||||| | |||||      ||||||||||||    
T  26906753 tcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaatatgttgctatcagagagagacacaacccataataatatag 26906852  T
Q  239 gtgtagtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttgatgtaaaagc 338  Q
    |||| || ||||||   |||||||||||| | || ||||| |||||  | |||||| | |||||  | ||||||||| ||   ||||||||| | || ||    
T  26906853 gtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttctttacaatgataaagaagttcaacggcattttgatttgaaggc 26906952  T
Q  339 ctgggcttgtgtgtctgaagattttgatatttttagagtaaccaaatctctccttgaa 396  Q
     |||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  26906953 atgggtttgtgtgtctgaggattttgatattatgagagtaaccaaatctctccttgaa 26907010  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 26906642 - 26906714
Alignment:
Q  34 aattcccaaataaagatatcttgtgaaagactgcagttctttgcccaacagaaagatatccttggcttgcaaa 106  Q
    ||||| ||||| ||||||   |||||||| ||||| || ||||| ||||| |||||||||||||| |||||||    
T  26906642 aattctcaaatgaagataatgtgtgaaagcctgcaattgtttgcacaacataaagatatccttggtttgcaaa 26906714  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 396
Target Start/End: Complemental strand, 17853037 - 17852900
Alignment:
Q  259 atgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttgatgtaaaagcctgggcttgtgtgtctgaag 358  Q
    ||||||||| ||||||||||||||||  | || ||| | |||||  |  || | ||| || ||||||||||| | |||||||||| |||||| || ||||    
T  17853037 atgggaggtgtcggtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattttgatctcaaagcctgggtttgtgtatcagaag 17852938  T
Q  359 attttgatatttttagagtaaccaaatctctccttgaa 396  Q
    |||||||| || | ||||||||||| ||||||||||||    
T  17852937 attttgatgttgtgagagtaaccaagtctctccttgaa 17852900  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 382
Target Start/End: Complemental strand, 31679942 - 31679703
Alignment:
Q  149 tagtagatgaatatttcacggttggtaggaaggatgataaagaggaactagttaatatgttgatatcagat------acagacaataataatataggtgt 242  Q
    |||||||| ||| ||||| |||||||||||||  |||||||||| |||||  |||||||||| ||||||||      || | |||| |||||||   |||    
T  31679942 tagtagatcaatctttcatggttggtaggaagagtgataaagagaaactaactaatatgttgctatcagatgttagcactgtcaatgataatattaatgt 31679843  T
Q  243 agtcgcaattacaggcatgggaggtctcggtaaaacgaccctcactcaacttatatacaaccagaaagaagttaaaaatcattttgatgtaaaagcctgg 342  Q
     ||  |||||   |||||||||||| ||||||||||  ||||  |||||||| | |||||  | ||||| ||| || | | ||||||||||||||| |||    
T  31679842 tgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaatgataaagatgttcaagaacgttttgatgtaaaagcttgg 31679743  T
Q  343 gcttgtgtgtctgaagattttgatatttttagagtaacca 382  Q
    | |||| |||| ||||| |||||| |||| || |||||||    
T  31679742 gtttgtctgtccgaagagtttgatgttttgagggtaacca 31679703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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