View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_20 (Length: 444)
Name: NF8966_low_20
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 43389479 - 43389688
Alignment:
| Q |
14 |
tatggaggttaccggaattatagttggaggttaagtttcaccggaaagtttttccataggtcaagattcatgacaatccaattgcaaatgtgttgcatat |
113 |
Q |
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| T |
43389479 |
tatggaggttaccggaattatagttggaggttaagtttcaccggaaagtttttccataggtcaagattcatgacaatccaattgcaaatatgttgcatat |
43389578 |
T |
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| Q |
114 |
ttcccttttgtatcatgttgcatatatactgtgccatggaattcaccacacacatcaatgatacagttttaaaatgtttgaagaattagttgaaaatcaa |
213 |
Q |
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| T |
43389579 |
ttccc-tttgtatcatgttgcatatatactgtgccatggaattcaccacacacatcaatgatacacttttaaaatgtttgaagaattagttgaaaatcaa |
43389677 |
T |
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| Q |
214 |
agtgggagaga |
224 |
Q |
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| T |
43389678 |
agtgggagaga |
43389688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 290 - 444
Target Start/End: Original strand, 43389754 - 43389908
Alignment:
| Q |
290 |
tgcgtatgtcttgaggttgcagtttgtgcccagctttgttttggccaagtgaaagaagatttttaagggttgtgaacttgttgttttttgtctggttgtt |
389 |
Q |
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| T |
43389754 |
tgcgtatgccttgaggttgcagtttgtgcccaactttgttttggccaagtgaaagaagatttttaagggttgtgaacttgttgttttttgtctggttgtt |
43389853 |
T |
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| Q |
390 |
gcttgtgaagaatatacggtgtagacaggtcctttctatcaatctccccgtgaat |
444 |
Q |
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| T |
43389854 |
gcttgtgaagaatatacggtgtagacaggtcctttctatcaatctccccgtgaat |
43389908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 41706908 - 41707133
Alignment:
| Q |
14 |
tatggaggttaccggaattatagttggaggttaagtttcaccggaaagtttttccataggtcaagattca----------------tgacaatccaattg |
97 |
Q |
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| T |
41706908 |
tatggaggttaccgaaatagtagtcggaggttaagtttcaccgaaaagtttttccataggtcaagattcaaggagagcaagttccttgacaatccaattg |
41707007 |
T |
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| Q |
98 |
caaatgtgttgcatatttcccttttgtatcatgttgcatatatactgtgccatggaattcaccacacacatcaatgatacagttttaaaatgtttgaaga |
197 |
Q |
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| T |
41707008 |
caaatatgttgcatatttcccttt-gtatcatgttgcgtatatactgtgccatggaattcaccacacaaatcaatgatacagttttaaaatgtttgaaga |
41707106 |
T |
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| Q |
198 |
attagttgaaaatcaaagtgggagaga |
224 |
Q |
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| T |
41707107 |
attaattgaaaatcaaagtgggagaga |
41707133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 287 - 396
Target Start/End: Original strand, 41707196 - 41707305
Alignment:
| Q |
287 |
agctgcgtatgtcttgaggttgcagtttgtgcccagctttgttttggccaagtgaaagaagatttttaagggttgtgaacttgttgttttttgtctggtt |
386 |
Q |
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| T |
41707196 |
agctacgtatgccttgaggttgcagtttgtgcccagctttgttttggccaagtgaaagaagatttttaagggttgtgaacttgttgttttttgtctggtt |
41707295 |
T |
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| Q |
387 |
gttgcttgtg |
396 |
Q |
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| T |
41707296 |
gttgcttgtg |
41707305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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