View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8966_low_25 (Length: 417)

Name: NF8966_low_25
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8966_low_25
NF8966_low_25
[»] chr8 (4 HSPs)
chr8 (50-411)||(15247677-15248051)
chr8 (71-153)||(10758178-10758260)
chr8 (71-161)||(32840907-32840997)
chr8 (92-164)||(1058019-1058091)
[»] chr1 (4 HSPs)
chr1 (300-410)||(28024328-28024438)
chr1 (77-161)||(489249-489333)
chr1 (78-160)||(39976138-39976220)
chr1 (78-118)||(6557074-6557114)
[»] chr5 (2 HSPs)
chr5 (305-404)||(503699-503798)
chr5 (77-159)||(11064727-11064809)
[»] chr6 (2 HSPs)
chr6 (312-373)||(23764695-23764756)
chr6 (83-152)||(33630430-33630499)
[»] chr3 (5 HSPs)
chr3 (318-410)||(48949162-48949254)
chr3 (71-158)||(42747703-42747791)
chr3 (77-118)||(25447172-25447213)
chr3 (128-156)||(30668947-30668975)
chr3 (92-152)||(39980797-39980857)
[»] chr7 (6 HSPs)
chr7 (300-370)||(32274457-32274527)
chr7 (300-333)||(32005741-32005774)
chr7 (81-161)||(33678839-33678919)
chr7 (66-153)||(19302479-19302566)
chr7 (92-153)||(19022527-19022588)
chr7 (103-160)||(44989630-44989687)
[»] chr4 (4 HSPs)
chr4 (71-153)||(27329997-27330079)
chr4 (91-161)||(1706681-1706751)
chr4 (77-118)||(15173230-15173271)
chr4 (77-118)||(41336862-41336903)
[»] chr2 (4 HSPs)
chr2 (300-405)||(37988643-37988749)
chr2 (71-164)||(2142710-2142803)
chr2 (92-161)||(43036615-43036684)
chr2 (133-161)||(16451177-16451205)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 50 - 411
Target Start/End: Original strand, 15247677 - 15248051
Alignment:
Q  50 tctttgtagactatagacctttttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttat 149  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15247677 tctttgtagactttagacctgtttgatttgacttatttgaatttatctacttacataagttttgtgagaatgaataagaaaatttatgaaaacaacttat 15247776  T
Q  150 gacattgttcattagnnnnnnncgacttattttcaaagttctataaaataac-------------ttataattaacttacgaaaaacaatttaactttat 236  Q
    |||||||||||||||       | ||||||||||||||||| ||||||||||             ||||||||||| |||||||||||||||||||||||    
T  15247777 gacattgttcattagtttttttcaacttattttcaaagttcaataaaataacatatgaaaacaacttataattaacgtacgaaaaacaatttaactttat 15247876  T
Q  237 annnnnnngctatagaaactatttatacataaacacttatcatatttatccaaacaagcctacgtggctgtttggtttggtggtgggagcacaaatatca 336  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15247877 atttttttgctatagaaactatttatacataaacacttatcatatttatccaaacaagcctacgtggctgtttggtttggtggtgggagcacaaatatca 15247976  T
Q  337 cgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgtgcgtctctgctc 411  Q
     |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  15247977 ggtcccaatgctccaccaccgtgatttttatgaagcttaaaattgtggctttaggcaaaacgtgcgtctgtgctc 15248051  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 10758178 - 10758260
Alignment:
Q  71 tttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgaca 153  Q
    ||||| ||||||||||| || |||||| || ||||||||||||||||| ||  | | | |||||||||||||| |||||||||    
T  10758178 tttgaattgacttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttatgaca 10758260  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 32840907 - 32840997
Alignment:
Q  71 tttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcat 161  Q
    ||||| |||||||| || |  ||||||||| ||| |||||||| |||| ||  |  || || |||||||||||||||||||||||||||||    
T  32840907 tttgaattgacttacttgagcttatctactcacacaagttttgcgagactgtttgggagaacttatgaaaacaacttatgacattgttcat 32840997  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 1058019 - 1058091
Alignment:
Q  92 ttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcattag 164  Q
    ||||||||||||||||||||||||||| ||  |  || || || |||||||  ||||||||||| ||||||||    
T  1058019 ttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacatttttcattag 1058091  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 300 - 410
Target Start/End: Complemental strand, 28024438 - 28024328
Alignment:
Q  300 gtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgt 399  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||| ||| |||  |||||||||    
T  28024438 gtggctgtttggtttggtggtgggagcacaaatatcgcgtcccaatgctccactgccgtgatttttatgaagcttaaaattgtggatttttgcaaaacgt 28024339  T
Q  400 gcgtctctgct 410  Q
    |||||| ||||    
T  28024338 gcgtctgtgct 28024328  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 489333 - 489249
Alignment:
Q  77 ttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcat 161  Q
    ||||||||||| |  ||||||||| |||||| |||||| ||| ||  ||  |||| |||||||||||||||||||||||| ||||    
T  489333 ttgacttatttcagattatctactaacataatttttgtaagactgtttagaaaaacttatgaaaacaacttatgacattgctcat 489249  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 39976138 - 39976220
Alignment:
Q  78 tgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttca 160  Q
    |||||||||| |  ||||||||| ||||||||||||||| | ||  | ||| || ||||||||| || |||||||||||||||    
T  39976138 tgacttatttgagattatctactgacataagttttgtgaaactgtttgagagaacttatgaaaataatttatgacattgttca 39976220  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 6557114 - 6557074
Alignment:
Q  78 tgacttatttaaatttatctacttacataagttttgtgaga 118  Q
    |||||||||| || ||||||||| |||||||||||||||||    
T  6557114 tgacttatttgaacttatctactaacataagttttgtgaga 6557074  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 404
Target Start/End: Complemental strand, 503798 - 503699
Alignment:
Q  305 tgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgtgcgtc 404  Q
    |||||||||||||||||||| || ||||||| ||||||||| ||| ||||| ||||||||||||||||| |||||  | | |||| ||||||||||||||    
T  503798 tgtttggtttggtggtgggaacaaaaatatcgcgtcccaatgctcaaccactgtgatttttatgaagctcaaaatagtagatttaagcaaaacgtgcgtc 503699  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 11064809 - 11064727
Alignment:
Q  77 ttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttc 159  Q
    |||| |||||| | |||||||||  ||||||||||||||||| ||  | ||| || ||||||||| | |||||||||||||||    
T  11064809 ttgatttatttgagtttatctaccaacataagttttgtgagattgtttgagagaacttatgaaaatagcttatgacattgttc 11064727  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 23764695 - 23764756
Alignment:
Q  312 tttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagct 373  Q
    |||||||||||| ||||||||||| |||||||||| || || ||||||||||||||||||||    
T  23764695 tttggtggtgggggcacaaatatctcgtcccaatattcaactaccgtgatttttatgaagct 23764756  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 33630430 - 33630499
Alignment:
Q  83 tatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgac 152  Q
    ||||| || |||| |||||||||||||||| ||||| ||  ||||||||||||| |||| ||||||||||    
T  33630430 tatttgaagttatttacttacataagttttatgagattgtttaagaaaatttattaaaataacttatgac 33630499  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 410
Target Start/End: Complemental strand, 48949254 - 48949162
Alignment:
Q  318 ggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgtgcgtctctgct 410  Q
    ||||| |||| ||||||||| ||||||| ||| || ||||||||||||| |||||| |||||  ||||||| |||| ||||||||||| ||||    
T  48949254 ggtggaagcataaatatcacatcccaatgctcaactaccgtgatttttaagaagctcaaaatagtggctttgggcagaacgtgcgtctatgct 48949162  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 42747703 - 42747791
Alignment:
Q  71 tttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaac-ttatgacattgtt 158  Q
    |||| |||||||||||| | ||||||||||| ||||||| |||||||| ||  |  || || ||||||||||||| |||||||||||||    
T  42747703 tttggtttgacttatttgagtttatctacttccataagtattgtgagactgtttttgagaacttatgaaaacaactttatgacattgtt 42747791  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 25447172 - 25447213
Alignment:
Q  77 ttgacttatttaaatttatctacttacataagttttgtgaga 118  Q
    ||||||||||| | |||||||||| |||||||||||||||||    
T  25447172 ttgacttatttgagtttatctactgacataagttttgtgaga 25447213  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 30668947 - 30668975
Alignment:
Q  128 aaaatttatgaaaacaacttatgacattg 156  Q
    |||||||||||||||||||||||||||||    
T  30668947 aaaatttatgaaaacaacttatgacattg 30668975  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 39980857 - 39980797
Alignment:
Q  92 ttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgac 152  Q
    |||||||||  |||||||||||||||| ||  ||||| || ||||||||||| ||||||||    
T  39980857 ttatctactagcataagttttgtgagactgtttaagagaacttatgaaaacagcttatgac 39980797  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 32274527 - 32274457
Alignment:
Q  300 gtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaa 370  Q
    |||| ||||||||||||| |||| | || ||||||||||||||||| ||| || |||||| ||||||||||    
T  32274527 gtggttgtttggtttggtcgtggaaacaaaaatatcacgtcccaatgctcaactaccgtggtttttatgaa 32274457  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 32005774 - 32005741
Alignment:
Q  300 gtggctgtttggtttggtggtgggagcacaaata 333  Q
    ||||||||||||||||||||||||||||||||||    
T  32005774 gtggctgtttggtttggtggtgggagcacaaata 32005741  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 33678919 - 33678839
Alignment:
Q  81 cttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcat 161  Q
    |||||||||| |||||||||| ||||||||||||||||     |  || || ||||||||||||||||| |||||||||||    
T  33678919 cttatttaaacttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaacttataacattgttcat 33678839  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 19302479 - 19302566
Alignment:
Q  66 acctttttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgaca 153  Q
    |||| ||||| ||||||||||| |  ||||||||| ||||||||||||||||| |   |  || |||||||||||||| |||||||||    
T  19302479 acctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgaca 19302566  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 19022527 - 19022588
Alignment:
Q  92 ttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgaca 153  Q
    ||||||||| |||| |||||||||||| ||  |  || ||||||||||||||||||||||||    
T  19022527 ttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgaca 19022588  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 44989630 - 44989687
Alignment:
Q  103 cataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttca 160  Q
    |||||||||||||||| ||  |  ||||| ||||||||||||||| ||||||||||||    
T  44989630 cataagttttgtgagactgtttgggaaaacttatgaaaacaacttctgacattgttca 44989687  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 27329997 - 27330079
Alignment:
Q  71 tttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgaca 153  Q
    ||||| ||| |||||||||  ||||||||||||||||||||  ||||| ||  | |||  |||||||||||||||||||||||    
T  27329997 tttgaattggcttatttaagcttatctacttacataagtttaatgagattgtttgagaggatttatgaaaacaacttatgaca 27330079  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 1706751 - 1706681
Alignment:
Q  91 tttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcat 161  Q
    |||||||||| |||||||||||||||||  |  | ||| || ||||||||||| |||||| ||||||||||    
T  1706751 tttatctactgacataagttttgtgagacggtttgagagaaattatgaaaacagcttatggcattgttcat 1706681  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 15173230 - 15173271
Alignment:
Q  77 ttgacttatttaaatttatctacttacataagttttgtgaga 118  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  15173230 ttgacttatttgaacttatctactgacataagttttgtgaga 15173271  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 41336903 - 41336862
Alignment:
Q  77 ttgacttatttaaatttatctacttacataagttttgtgaga 118  Q
    ||||||||||| | |||||||||| |||||||||||||||||    
T  41336903 ttgacttatttgagtttatctactcacataagttttgtgaga 41336862  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 37988749 - 37988643
Alignment:
Q  300 gtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaatta-tggctttaggcaaaacg 398  Q
    |||||| |||||||||||||||| |||||||||||||| |  ||||  || || |||||||||||  ||||||| || |||| | ||||| | ||||||     
T  37988749 gtggctatttggtttggtggtggaagcacaaatatcacttttcaatgttcaactaccgtgattttggtgaagctcaagattagtagctttggtcaaaaca 37988650  T
Q  399 tgcgtct 405  Q
    |||||||    
T  37988649 tgcgtct 37988643  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 2142803 - 2142710
Alignment:
Q  71 tttgatttgacttatttaaatttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcattag 164  Q
    |||| |||||||||||| | ||||||||| | |||||||||| ||||| ||  |  || || |||||||||||| || ||||| ||||||||||    
T  2142803 tttggtttgacttatttgagtttatctacatgcataagttttatgagactgtttgggagaacttatgaaaacaagttgtgacaatgttcattag 2142710  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 43036684 - 43036615
Alignment:
Q  92 ttatctacttacataagttttgtgagagtgaataagaaaatttatgaaaacaacttatgacattgttcat 161  Q
    ||||||| |||||||||||||||||||||   |  ||||| |||||| |||| ||||||||||| |||||    
T  43036684 ttatctagttacataagttttgtgagagtatttgggaaaacttatgagaacatcttatgacattattcat 43036615  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 16451205 - 16451177
Alignment:
Q  133 ttatgaaaacaacttatgacattgttcat 161  Q
    |||||||||||||||||||||||||||||    
T  16451205 ttatgaaaacaacttatgacattgttcat 16451177  T

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