View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8966_low_27 (Length: 393)
Name: NF8966_low_27
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_27 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] chr2 (9 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold2168 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 47051842 - 47052221
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47051842 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
47051941 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgg |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47051942 |
taatttctaaacgaatcatcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcaaagagtctcaatgagcaactctcacaatatgg |
47052041 |
T |
|
| Q |
214 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47052042 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
47052141 |
T |
|
| Q |
314 |
aggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagagg |
393 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47052142 |
aggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagagg |
47052221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 19657778 - 19658180
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
19657778 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattatccattctaacctacaaaa |
19657877 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattga--attgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19657878 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatat |
19657977 |
T |
|
| Q |
212 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19657978 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaatttctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
19658077 |
T |
|
| Q |
312 |
taaggatga---------------------ttgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgag |
390 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19658078 |
taaggatgattgatttggtgatgaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggattgagggacagagagctaacgggagtgag |
19658177 |
T |
|
| Q |
391 |
agg |
393 |
Q |
| |
|
||| |
|
|
| T |
19658178 |
agg |
19658180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 14649151 - 14648945
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaa |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| | | ||| | ||||| || | ||| |
|
|
| T |
14649151 |
acatcaataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctaatctaatctcaaaaa |
14649052 |
T |
|
| Q |
113 |
ataatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
|||||||| ||| | | |||||| |||||| |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| |||| |||| |
|
|
| T |
14649051 |
ttaatttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctcgaagaagtctcaatgaacaactttcactatat |
14648953 |
T |
|
| Q |
212 |
gggtattc |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
14648952 |
gggtattc |
14648945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 14658941 - 14658735
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaa |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| | | ||| | ||||| || | ||| |
|
|
| T |
14658941 |
acatcaataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctaatctaatctcaaaaa |
14658842 |
T |
|
| Q |
113 |
ataatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
|||||||| ||| | | |||||| |||||| |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| |||| |||| |
|
|
| T |
14658841 |
ttaatttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctcgaagaagtctcaatgaacaactttcactatat |
14658743 |
T |
|
| Q |
212 |
gggtattc |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
14658742 |
gggtattc |
14658735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 34899578 - 34899484
Alignment:
| Q |
156 |
aattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaaccc |
250 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||||| ||| | ||| ||||||| ||||| | |||| |||||||||||||||| |
|
|
| T |
34899578 |
aattgtaagttgataaatacatctcaaagagtcttaatgagcaactttcatcaaatgagtattcttcttcttcctcaaggcacaaaccctaaccc |
34899484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 29290457 - 29290505
Alignment:
| Q |
139 |
taaataaacactaattgaattgtaagttgataaatatacttcaaagagt |
187 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
29290457 |
taaatatacactaattgaagggtaagttgataaatatacctcaatgagt |
29290505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 42784374 - 42784000
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784374 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
42784275 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgg |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784274 |
taatttctaa-cgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcaaagagtctcaatgagcaactctcacaatatgg |
42784176 |
T |
|
| Q |
214 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42784175 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgaccaattattctta |
42784076 |
T |
|
| Q |
314 |
aggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
389 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42784075 |
aggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggaagtga |
42784000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5520742 - 5520790
Alignment:
| Q |
18 |
caataatattttctcatgaattagaaactcattctaccacttctctaac |
66 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
5520742 |
caataatattttctcatgaattagaaaatcattctactacttctctaac |
5520790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 27199617 - 27199653
Alignment:
| Q |
15 |
catcaataatattttctcatgaattagaaactcattc |
51 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27199617 |
catcaataatattctctcatgaattagaaactcattc |
27199653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 5520832 - 5520896
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgag |
196 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
5520832 |
tcatgtctaaatatgcactaattgaaagataagttgataaatatacctcaaagaacctcaatgag |
5520896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 809988 - 810367
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
809988 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaaccaacaaaa |
810087 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
810088 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcagggagtctcaatgagcaactctcacaatatgg |
810187 |
T |
|
| Q |
214 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
810188 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgaccaattattctta |
810287 |
T |
|
| Q |
314 |
aggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagagg |
393 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
810288 |
aggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggaagtgagagg |
810367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 27561058 - 27560660
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
27561058 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattattcattctaacctacaaaa |
27560959 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattga--attgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27560958 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatat |
27560859 |
T |
|
| Q |
212 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27560858 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaatttataccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
27560759 |
T |
|
| Q |
312 |
taaggatgattgat---------------------ttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
389 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27560758 |
taaggatgattgatttggtgatgaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
27560660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 37457499 - 37457101
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
37457499 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattatacattctaacctacaaaa |
37457400 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattga--attgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37457399 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatat |
37457300 |
T |
|
| Q |
212 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37457299 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaatttataccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
37457200 |
T |
|
| Q |
312 |
taaggatgattgat---------------------ttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
389 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37457199 |
taaggatgattgatttggtgataaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
37457101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 45330514 - 45330429
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtat |
217 |
Q |
| |
|
|||||| |||||| ||||||||||| || |||||||||||||||| | |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
45330514 |
tcatgtctaaatatgcactaattgaaatgcaagttgataaatataccttaaagagtctcaatgagcaaccttcacaaaatgggtat |
45330429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 44314761 - 44314709
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaac |
66 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
44314761 |
acatcaataatattttcttatgaattagaaactcattctactacttctttaac |
44314709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 44322940 - 44322888
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaac |
66 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
44322940 |
acatcaataatattttcttatgaattagaaactcattctactacttctttaac |
44322888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 31712831 - 31712745
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| || |||||||| | ||||||||||||||||| | ||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
31712831 |
tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaaccttcacaaaatgggtatt |
31712745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 39156280 - 39156366
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| || |||||||| | ||||||||||||||||| | ||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
39156280 |
tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaaccttcacaaaatgggtatt |
39156366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 10414617 - 10414571
Alignment:
| Q |
139 |
taaataaacactaattgaattgtaagttgataaatatacttcaaaga |
185 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
10414617 |
taaatatacactaattgaaaggtaagttgataaatatacctcaaaga |
10414571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 4707795 - 4708173
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4707795 |
acatcaataatattttctcatgaattagaaactcattccaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
4707894 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgg |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4707895 |
taatttctaa-cgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcaaagagtctcaatgagcaactctcacaatatgg |
4707993 |
T |
|
| Q |
214 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4707994 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccgatagagcttgaatatgaagttgctttacttagatgaccaattattctta |
4708093 |
T |
|
| Q |
314 |
aggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagagg |
393 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4708094 |
aggatgattgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacggaagtgagagg |
4708173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 15998546 - 15998265
Alignment:
| Q |
15 |
catcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| || ||||||| || | ||| | ||||| || | ||| |
|
|
| T |
15998546 |
catcaataatattttctcatgaattagaaactcattctactacttctctaacaat-gttaacgataaaatccccatttcatctactctaatctcaataat |
15998448 |
T |
|
| Q |
115 |
-aatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatac-ttcaaagagtctcaatgagcaactctcacaatatg |
212 |
Q |
| |
|
||||||||| | | ||||| ||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||| | || | |||||||| |
|
|
| T |
15998447 |
taatttctaacagtaa--tcatgcgtaaatatacactaattgagttgtaaattgataaatataccttcaagaagtctcaatgagaaccttttacaatatg |
15998350 |
T |
|
| Q |
213 |
ggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttg-aatatgaagttgctttacttagatg |
299 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||| | ||||| ||||||| |
|
|
| T |
15998349 |
aatattcttcttcc---tcaaagcacacaccctaacccccaaaattctaccatgagagcttgcaatatgaaatagctttgattagatg |
15998265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 26918584 - 26918780
Alignment:
| Q |
15 |
catcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaaa |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||||| |||| ||| | ||||| || | || |
|
|
| T |
26918584 |
catcaataat-ttttctcatgaattagaaactcattctactacttctataacta-tgttaaccataaaatccccatatcatctactctaatctcaataat |
26918681 |
T |
|
| Q |
114 |
taatttctaa-acgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
||||| |||| || || ||||| |||||| |||||||||| |||||| ||||||||||||| || ||| ||||| ||||| ||||| ||||| ||| |
|
|
| T |
26918682 |
taattcctaacaccaa---tcatgcctaaatatgcactaattgagttgtaaattgataaatatacctccaagaagtcttaatgatcaactttcacagtat |
26918778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 5735591 - 5735970
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5735591 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccacaaaatccctacattatccattctaacctacaaaa |
5735690 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5735691 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtatgtttataaatatacctcaaagagtctcaatgagcaactctcacaatatgg |
5735790 |
T |
|
| Q |
214 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5735791 |
gtattctcctattacttcaaagcacaaaccctaacccccaaatttctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
5735890 |
T |
|
| Q |
314 |
aggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagagg |
393 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5735891 |
aggatggttgatttgggaaaggaaggaaaaagaaatagaagaagaggaatgagggacagagagataacgggagtgagagg |
5735970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 5772703 - 5773082
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5772703 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccacaaaatccctacattatccattctaacctacaaaa |
5772802 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5772803 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtatgtttataaatatacctcaaagagtctcaatgagcaactctcacaatatgg |
5772902 |
T |
|
| Q |
214 |
gtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5772903 |
gtattctcctattacttcaaagcacaaaccctaacccccaaatttctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattctta |
5773002 |
T |
|
| Q |
314 |
aggatgattgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagagg |
393 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5773003 |
aggatggttgatttgggaaaggaaggaaaaagaaatagaagaagaggaatgagggacagagagataacgggagtgagagg |
5773082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 7688276 - 7688223
Alignment:
| Q |
147 |
cactaattgaattgtaagttgataaatatacttc-aaagagtctcaatgagcaa |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
7688276 |
cactaattgaaatgtaagttgataaatatacttcaaaaaaatctcaatgagcaa |
7688223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 5742842 - 5743240
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5742842 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattattcattctaacctacaaaa |
5742941 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattga--attgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5742942 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatat |
5743041 |
T |
|
| Q |
212 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaaattctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5743042 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaatttataccaatagagcttgaatatgaagttgctttacttagatgatcaattattct |
5743141 |
T |
|
| Q |
312 |
taaggatga---------------------ttgatttgggaaaggaaggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
389 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5743142 |
taaggatgattgatttggtgataaaattggttgatttgggaaaggaaggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtga |
5743240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 3982 - 3775
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct--acaa |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| | | ||| | ||||| || | || |
|
|
| T |
3982 |
acatcaataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctactctaatctcaaaaa |
3883 |
T |
|
| Q |
112 |
aataatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactctcacaata |
210 |
Q |
| |
|
| |||||||| ||| | | |||||| |||||| |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| |||| ||| |
|
|
| T |
3882 |
attaatttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctccaagaagtctcaatgaacaactttcactata |
3784 |
T |
|
| Q |
211 |
tgggtattc |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
3783 |
tgggtattc |
3775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 27526113 - 27525906
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct--acaa |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| | | ||| | ||||| || | || |
|
|
| T |
27526113 |
acatcaataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctactctaatctcaaaaa |
27526014 |
T |
|
| Q |
112 |
aataatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactctcacaata |
210 |
Q |
| |
|
| |||||||| ||| | | |||||| |||||| |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| |||| ||| |
|
|
| T |
27526013 |
attaatttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctccaagaagtctcaatgaacaactttcactata |
27525915 |
T |
|
| Q |
211 |
tgggtattc |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
27525914 |
tgggtattc |
27525906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 13143638 - 13143724
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
13143638 |
tcatgtctaaatatgcactaattgaaatgtaagttgataaatataccttaaagagtctcaatgagcaaccttcataaaatgggtatt |
13143724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 17354364 - 17354278
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| ||||||||||| | ||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17354364 |
tcatgtctaaatatgcactaattgaaatataagttgataaatataccttaaagagtctcaatgagcaaccttcacaaaatgggtatt |
17354278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 22012834 - 22012782
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaac |
66 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
22012834 |
acatcaataatattttcttatgaattagaaactcattctactacttctttaac |
22012782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 27682979 - 27682893
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| || |||||||| | ||||||||||||||||| | ||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
27682979 |
tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaaccttcacaaaatgggtatt |
27682893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 27690300 - 27690214
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| || |||||||| | ||||||||||||||||| | ||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
27690300 |
tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaaccttcacaaaatgggtatt |
27690214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 30229985 - 30230071
Alignment:
| Q |
132 |
tcatgtgtaaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtatt |
218 |
Q |
| |
|
|||||| |||||| || |||||||| | ||||||||||||||||| | ||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
30229985 |
tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaaccttcacaaaatgggtatt |
30230071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 25479532 - 25479584
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaac |
66 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| | ||| ||||||||||| |
|
|
| T |
25479532 |
acatcaatgatattttcttaagaattagaaactcactatacaacttctctaac |
25479584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 34378262 - 34378027
Alignment:
| Q |
15 |
catcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| |||| ||| | ||||| || | ||| |
|
|
| T |
34378262 |
catcaataatattttctcatgaattagaaactcattctactacttctctaactatatttaaccatacaatccccatatcatctactctaatctcaaaaat |
34378163 |
T |
|
| Q |
114 |
taatttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatata-cttcaaagagtctcaatgagcaactctcacaatatg |
212 |
Q |
| |
|
||| ||||||| | | ||| || |||||| || ||||| | |||||| |||||||||||| ||||||| ||| | ||||||||||| ||| ||||| |
|
|
| T |
34378162 |
taaattctaaa-aactaatcaagtataaatatgcattaattaagttgtaaattgataaatataccttcaaaaagttttaatgagcaactttcatcatatg |
34378064 |
T |
|
| Q |
213 |
ggtattctccttctacttcaaagcacaaaccctaacc |
249 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34378063 |
ggtattcctcttctttcccaaagcacaaaccctaacc |
34378027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 28802456 - 28802220
Alignment:
| Q |
15 |
catcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| || ||||||| || | ||| | ||||| || | || |
|
|
| T |
28802456 |
catcaataatattttctcatgaattagaaactcattctactacttctctaac-aatgttaacgataaaatccccatttcatctactctaatctcaataat |
28802358 |
T |
|
| Q |
114 |
taatttctaa-acgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatata-cttcaaagagtctcaatgagcaactctcacaatat |
211 |
Q |
| |
|
|||||||||| || || ||||| |||||| ||||||||||| |||| | |||||||||||| |||||| |||||||||||| | || | ||||||| |
|
|
| T |
28802357 |
taatttctaacactaa---tcatgcctaaatatacactaattgagttgtcaattgataaatataccttcaagaagtctcaatgagaaccttttacaatat |
28802261 |
T |
|
| Q |
212 |
gggtattctccttctacttcaaagcacaaaccctaacccccaaa |
255 |
Q |
| |
|
||||||| ||||| | |||||||||| ||||||||||||||| |
|
|
| T |
28802260 |
gggtatt---cttcttcctcaaagcacacaccctaacccccaaa |
28802220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 6023844 - 6023969
Alignment:
| Q |
139 |
taaataaacactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcac |
238 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||| |||||| |||| |||| | |||| |||||| ||| |
|
|
| T |
6023844 |
taaatatacactaattgaaatgtaagttgataaatatacctcaaagagtctcaatgaacgactttcacaagatggatatttttcttcctattcaaaacac |
6023943 |
T |
|
| Q |
239 |
aaaccctaacccccaaaattctaccaa |
265 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
|
|
| T |
6023944 |
aaaccctaa-ccccaaaatcctaccaa |
6023969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2168 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold2168
Description:
Target: scaffold2168; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 62 - 10
Alignment:
| Q |
14 |
acatcaataatattttctcatgaattagaaactcattctaccacttctctaac |
66 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
62 |
acatcaataatattttcttatgaattagaaactcattctactacttctttaac |
10 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 32893 - 33002
Alignment:
| Q |
15 |
catcaataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaat |
114 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||| ||||| ||||||||||||| || ||| || ||||||| || ||||| ||| | |||| ||||| |
|
|
| T |
32893 |
catcaataatatttagtcaagatttagaaactcactctacaacttctctaactatag-taattataaaatcccaattttatctattattacctctaaaat |
32991 |
T |
|
| Q |
115 |
aatttctaaac |
125 |
Q |
| |
|
||||||||||| |
|
|
| T |
32992 |
aatttctaaac |
33002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University