View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_29 (Length: 376)
Name: NF8966_low_29
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 43173932 - 43173637
Alignment:
| Q |
11 |
tggacatcctcaatggcaggaggcacataaaaatgaccgctgcgcgacttcacgactgtcttacccaagtcatccttgatttcattggaatcaacaatgg |
110 |
Q |
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| T |
43173932 |
tggacatcctcaatggcaggaggcacataaaaatgaccgctgcgcgacttcacgactgtcttacccaagtcatccttgatttcatttgaatcaacaatgg |
43173833 |
T |
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| Q |
111 |
atggcttagccactccaagataccaaacattaccaccaatggacccaaggcactgagtcacacttgcatgatgtgtgatattagaaaactcaagtggacg |
210 |
Q |
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| T |
43173832 |
atggcttagccactccaagataccaaacattaccaccaatggacccaaggcactgagtcacacttgcatgatgtgtgatattagaaaactcaagtggacg |
43173733 |
T |
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| Q |
211 |
attttcaagatgcataatgtagaacctaacaaacaaacacaaattaattccaataaattggtgacttgcagcataatgtcaatctgaattgagaaa |
306 |
Q |
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| T |
43173732 |
attttcaagatgcataatgtagaacctaacaaacaaacacaaattaattccaataaattggcgacttgcagcataatgtcaatctgaatagagaaa |
43173637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 43176765 - 43176549
Alignment:
| Q |
11 |
tggacatcctcaatggcaggaggcacataaaaatgaccgctgcgcgacttcacgactgtcttacccaagtcatccttgatttcattggaatcaacaatgg |
110 |
Q |
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| T |
43176765 |
tggacgtcctcaacggggggaggaacgtaaaaatgaccgccgcacgacttcgcgacagtgttttctgagtcatccttgatttcatttggatcaacaactg |
43176666 |
T |
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| Q |
111 |
atggcttagccactccaagataccaaacattaccaccaatggacccaaggcactgagtcacacttgcatgatgtgtgatattagaaaactcaagtggacg |
210 |
Q |
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| T |
43176665 |
atggcttagctactccaagataccaaacgttaccaccaatggacccaaggcactgagtcacccttgcatgatgtgtgattctagaaaactttagtgggaa |
43176566 |
T |
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| Q |
211 |
attttcaagatgcataa |
227 |
Q |
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| T |
43176565 |
atgttcaagatgcataa |
43176549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 43173613 - 43173580
Alignment:
| Q |
339 |
ggataaatacaacccagacagcgagaaattacta |
372 |
Q |
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| T |
43173613 |
ggataaatacaacccagacagcgagaaattacta |
43173580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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