View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8966_low_3 (Length: 896)
Name: NF8966_low_3
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 16 - 825
Target Start/End: Complemental strand, 46301866 - 46301066
Alignment:
| Q |
16 |
agagaacgatgaagatgacaaacacaattaccacaaacgaagagaaaataggatgaaaagttgaagaaccttgtgaaacaagaaacttcgattgatgacg |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46301866 |
agagaaagatgaagatgacaaacacaattaccacaaacgaagagaaaataggatgaaaagttgaagaaccttgtgaaacaagaaacttcaattgatgacg |
46301767 |
T |
|
| Q |
116 |
aaaaataaagaaattcttcaaattgaagaagaattacacaagattgtgatgaaaacacgatcaaatcactaagaaggtgtaagaaaatggaagcaaatcc |
215 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
46301766 |
aaaaatgaagaaattcttcaaactgaagaagaattacacaagattgtgatgaaaacacgatcaaatcacttag---gtgtaagaaaatggatgc------ |
46301676 |
T |
|
| Q |
216 |
atgaagaagagagaaaaatgtgatgaacgcagcggaaaaggttagataggattgtaacaacctcttttgaaaagggaaatgataccataatatgaaatga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301675 |
----------gagaaaaatgtgatgaacgcagcggaaaaggttagataggattgtaacaacctcttttgaaaagggaaatgataccataatatgaaatga |
46301586 |
T |
|
| Q |
316 |
g---------tttaatttgcattgattatgaatgaagagtagatttagtatttatatacaaggctattgtactactaatatgtattaaacttcactaaaa |
406 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301585 |
gagaaatgagtttaatttgcattgattatgaatgaagagtacatttagtattcatatacaaggctattgtactactaatatgtattaaacttcactaaaa |
46301486 |
T |
|
| Q |
407 |
tgtactacactatgatgatttgtactactagctatactaactaactcttattcaagtatttataacagaacaccctccctaaaaataaacagaatactaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
46301485 |
tgtactacactatgatgatttgtactactagctatactaactaactcttattcaagtatttataactgaacaacctccctaaaaataaacagaatactaa |
46301386 |
T |
|
| Q |
507 |
ccaactcttattcaagtattgggtcagtccatgtattggaccctagtctatcagaattccagatttacaatgtaattatcatagtttaaacagctgcata |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46301385 |
ccaactcttattcaagtattgggtcagtccatgtattggaccctagtctatcagaattccagatttactatgtaattatcatagtttaaacagctgcata |
46301286 |
T |
|
| Q |
607 |
tatttgtacaagtttctaaaccttgtaaaagttaatgagataacatcatgttatatacctgtaagcttcaaaataacattcttattctttaacataaatc |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301285 |
tatttgtacaagtttctaaaccttgtaaaagttaatgagataa-atcatgttatatacctgtaagcttcaaaataacattcttattctttaacataaatc |
46301187 |
T |
|
| Q |
707 |
aaatgctagaatagaca--aacaaccttgtatgacatgttcaatattcataacaatgacaaactcattaaataaattaagataatctccaatgcaaatca |
804 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301186 |
aaatgctagaatagacaacaacaaccttgtatgacatgttcaatattcataacaatgacaaactcattaaataaattaagataatctccaatgcaaatca |
46301087 |
T |
|
| Q |
805 |
gtgtagcaaatgtcatcataa |
825 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46301086 |
gtgtagcaaatgtcatcataa |
46301066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 20698244 - 20698524
Alignment:
| Q |
16 |
agagaacgatgaagatgacaaacacaattaccacaaacgaagagaaaataggatgaaaagttgaagaaccttgtgaaacaagaaacttcgattgatgacg |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20698244 |
agagaacgatgaagatgatcaacacaattaccacaaacgaagagaaaataggatgaaaagttgaagaaccttgtgaaacaagaaacttaaattgatgacg |
20698343 |
T |
|
| Q |
116 |
aaaaataaagaaattcttcaaattgaagaagaattacacaagattgtgatgaaaacacgatcaaatcactaagaaggtgtaagaaaatggaagcaaatcc |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
20698344 |
aaaaacgaagaaattcttcaaattgaagaagaattacacaagatcgtgatgaaaacacaatcaaatcactgagaaggtgaaagaaaatggatgaaaatcc |
20698443 |
T |
|
| Q |
216 |
atgaagaagagagaaaaatgtgatgaacgcagcggaaaaggttagataggattgtaacaacctcttttgaaaagggaaatg |
296 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| ||||| |||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
20698444 |
atgaagaagagaaaaaaatgtgatgaatgcagcggaaaatgttagttaggtatgtaacaacctctcttgaagagggaaatg |
20698524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 531 - 754
Target Start/End: Complemental strand, 20701753 - 20701540
Alignment:
| Q |
531 |
cagtccatgtattggaccctagtctatcagaattccagatttacaatgtaatta----tcatagtttaaacagctgcatatatttgtacaagtttctaaa |
626 |
Q |
| |
|
|||||||||||||| ||| |||| |||| ||||||||||||||||||||||||| || | ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
20701753 |
cagtccatgtattgtacc-tagtttatctgaattccagatttacaatgtaattaattatcttggtttaaatagcagcatatatttgtacaagtttctaaa |
20701655 |
T |
|
| Q |
627 |
ccttgtaaaagttaatgagataacatcatgttatatacctgtaagcttcaaaataacattcttattctttaacataaatcaaatgctagaatagacaaac |
726 |
Q |
| |
|
| ||||||||||| | |||||||||| |||||| |||||||||||| ||||||||| |||||||||||| ||| || ||||||| ||| |
|
|
| T |
20701654 |
------------tgatgagataacaccctgttatatacatgtaagattcaaaataacactcttattctctaacataaatcatatgttacaatagac-aac |
20701568 |
T |
|
| Q |
727 |
aaccttgtatgacatgttcaatattcat |
754 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
|
|
| T |
20701567 |
aaccttgtatgacatggtcaattttcat |
20701540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 479 - 521
Target Start/End: Complemental strand, 20701840 - 20701798
Alignment:
| Q |
479 |
ccctccctaaaaataaacagaatactaaccaactcttattcaa |
521 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
20701840 |
ccctccctaaaaatatacagattactaactaactcttattcaa |
20701798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 24508754 - 24508690
Alignment:
| Q |
327 |
attgattatgaatgaagagtagatttagtatttatatacaaggctattgtactactaatatgtatt |
392 |
Q |
| |
|
||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24508754 |
attgattgtgaatga-gagtgcatttaatatttatatacaaggctattgtactactaatatgtatt |
24508690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University