View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8966_low_32 (Length: 299)

Name: NF8966_low_32
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8966_low_32
NF8966_low_32
[»] chr5 (2 HSPs)
chr5 (21-282)||(12541026-12541287)
chr5 (22-282)||(28385676-28385936)
[»] chr7 (1 HSPs)
chr7 (21-282)||(3417107-3417365)
[»] chr2 (3 HSPs)
chr2 (77-256)||(13440597-13440776)
chr2 (21-218)||(13448704-13448901)
chr2 (22-218)||(13455176-13455372)
[»] chr6 (2 HSPs)
chr6 (81-215)||(12589810-12589944)
chr6 (132-204)||(12483116-12483188)
[»] chr4 (5 HSPs)
chr4 (81-218)||(48958548-48958685)
chr4 (81-222)||(48962695-48962836)
chr4 (119-217)||(48911984-48912082)
chr4 (87-162)||(48965736-48965811)
chr4 (133-173)||(48951687-48951727)
[»] chr8 (1 HSPs)
chr8 (119-215)||(12641122-12641218)
[»] scaffold0536 (2 HSPs)
scaffold0536 (119-204)||(6163-6248)
scaffold0536 (96-218)||(1103-1225)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 12541026 - 12541287
Alignment:
Q  21 cactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541026 cactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctga 12541125  T
Q  121 ataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541126 ataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataa 12541225  T
Q  221 tgtagcctgtacttttgaacactgtatcaagcatcaatcctatgaatttgctgagaaccttt 282  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12541226 tgtagcctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaaccttt 12541287  T

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Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 28385676 - 28385936
Alignment:
Q  22 actgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaa 121  Q
    |||||||||||| ||||||| ||||||||| | ||| |||||||||| ||| || ||| ||  |||||| || |||||||||||||||   ||||  |||    
T  28385676 actgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagttttacgaa 28385775  T
Q  122 taaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataat 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  28385776 taaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttgatgat 28385875  T
Q  222 gtagcctgtacttttgaacactgtatcaagcatcaatcctatgaatttgctgagaaccttt 282  Q
    ||||||||||||||||| ||| || |||||||||| |||||||||  ||||||||||||||    
T  28385876 gtagcctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaaccttt 28385936  T

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Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 3417365 - 3417107
Alignment:
Q  21 cactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctga 120  Q
    ||||||||||||||| |||||||||||||| |  ||| |||| ||||||||| |||||||||| |||||||  |||| ||||||| || || || ||  |    
T  3417365 cactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccccacctgatttctctagagtggttctccaa 3417266  T
Q  121 ataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataa 220  Q
    ||| ||||   |||||||||||||||||||||||||||   ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||  |    
T  3417265 atagaaga---tggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacga 3417169  T
Q  221 tgtagcctgtacttttgaacactgtatcaagcatcaatcctatgaatttgctgagaaccttt 282  Q
    |  ||||  |||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  3417168 taaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaaccttt 3417107  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 13440597 - 13440776
Alignment:
Q  77 caccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtg 176  Q
    ||||||| ||||||||| ||||||||||||||||| ||||  |||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  13440597 caccctcctttcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtg 13440696  T
Q  177 ttggacacactcttctccatcaagttcaacaaagttgttgataatgtagcctgtacttttgaacactgtatcaagcatca 256  Q
    |||||  ||||||||||| |||||||||   ||||||||||| |||    || ||||||||| ||||||  |||||||||    
T  13440697 ttggatgcactcttctccgtcaagttcagtgaagttgttgatgatgagtgctttacttttgagcactgtcccaagcatca 13440776  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 13448704 - 13448901
Alignment:
Q  21 cactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctga 120  Q
    |||||||||||||  || ||| | |||||| || |||  ||||||| || || |||||||||||||||||||| ||| ||||||||||    ||||  ||    
T  13448704 cactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttgcga 13448803  T
Q  121 ataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgat 218  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||   |||||||||||    
T  13448804 ataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttgat 13448901  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 13455176 - 13455372
Alignment:
Q  22 actgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaa 121  Q
    ||||||||||||  || |||||  |||||||| ||| |||||||  || || ||  | |||| ||||||||| ||| ||| ||||||| | || |   ||    
T  13455176 actgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgatttttcttgaacggttctgcaaa 13455275  T
Q  122 taaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgat 218  Q
    ||| |||||||||||||| ||||||| |||||||||| || ||||| |||||||||||||  |||||||||||||||| ||||   |||||||||||    
T  13455276 taagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttgat 13455372  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 12589944 - 12589810
Alignment:
Q  81 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 180  Q
    ||||||||||||  |||||||||||||||   |||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |    
T  12589944 ctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttg 12589845  T
Q  181 acacactcttctccatcaagttcaacaaagttgtt 215  Q
    ||||||||||  |||||||||||| | ||||||||    
T  12589844 acacactcttggccatcaagttcagcgaagttgtt 12589810  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 12483188 - 12483116
Alignment:
Q  132 tggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttca 204  Q
    |||||| | ||||||||||||||||||| || |||| |||||||||| ||| || ||||  ||||| ||||||    
T  12483188 tggacctaaatgccaagccttgtgacccatgattttttcgtagtgttcgacgcattctttgccatccagttca 12483116  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 48958548 - 48958685
Alignment:
Q  81 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 180  Q
    ||||||||||||| ||| ||||||||||||| |||   |||||| |||||  ||||||||||||||| |||||||||||||| |||||| |||||||| |    
T  48958548 ctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcg 48958647  T
Q  181 acacactcttctccatcaagttcaacaaagttgttgat 218  Q
    |  |||||||| |||||||||||||  |||||||||||    
T  48958648 atgcactcttcaccatcaagttcaatgaagttgttgat 48958685  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 48962695 - 48962836
Alignment:
Q  81 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 180  Q
    ||||| ||||||  ||||||||||||||| |  |||  |||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||| |    
T  48962695 ctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcg 48962794  T
Q  181 acacactcttctccatcaagttcaacaaagttgttgataatg 222  Q
    |  |||||||| || ||||||||| | |||||||||| ||||    
T  48962795 atgcactcttcaccgtcaagttcagcgaagttgttgacaatg 48962836  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 48912082 - 48911984
Alignment:
Q  119 gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga 217  Q
    |||||| ||||| |||||||||||||||||| |||||||  || |||||||||||||||| || | ||||||| || ||||||||| |||| |||||||    
T  48912082 gaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga 48911984  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 48965736 - 48965811
Alignment:
Q  87 tcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtg 162  Q
    ||||||| |||||||||||||||   ||||  |||||| ||||| ||||||||||||||||||||| |||||||||    
T  48965736 tcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 48965811  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 48951687 - 48951727
Alignment:
Q  133 ggaccaagatgccaagccttgtgacccgtggttttctcgta 173  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  48951687 ggaccaagatgccaagccttgtgaccgatggttttctcgta 48951727  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 12641218 - 12641122
Alignment:
Q  119 gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt 215  Q
    |||||| | ||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||  || ||||| |||||||||||||||||||||||    
T  12641218 gaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

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Target: scaffold0536 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 6248 - 6163
Alignment:
Q  119 gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttca 204  Q
    |||||| |||||  ||||||||||||||||| |||||||| || |||||||||||||||| ||   ||||||| || |||||||||    
T  6248 gaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

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Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 1225 - 1103
Alignment:
Q  96 tgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctcca 195  Q
    ||||||||||||| || ||||  ||| || ||| | ||| |||||| ||||||||||||||||  ||||| |||| || |  |  |||||||||||||||    
T  1225 tgctttctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgaccgatggttctctcataatactcaacacactcttctcca 1126  T
Q  196 tcaagttcaacaaagttgttgat 218  Q
    || || || |||||| |||||||    
T  1125 tcgagctctacaaagctgttgat 1103  T

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