View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_33 (Length: 297)
Name: NF8966_low_33
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_33 |
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| [»] scaffold0854 (2 HSPs) |
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Alignment Details
Target: scaffold0854 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 1362 - 1452
Alignment:
| Q |
194 |
ctgtcagcaccacacctcttcctcacaaccaccatcatctgtcgtcacctccagtcgtcaccaccattgccgtcgaccttcacatgatgtc |
284 |
Q |
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| T |
1362 |
ctgtcagcaccacacctcttcctcacaaccaccatcatctgtcgtcacctccagtcgtcaccaccattgtcgtcgaccttcacatgatgtc |
1452 |
T |
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Target: scaffold0854; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1142 - 1183
Alignment:
| Q |
1 |
cgtgccccattctctcctctgtttagtttctctcagaactga |
42 |
Q |
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| T |
1142 |
cgtgccccattctctcctctgtttagtttctctcagaactga |
1183 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 4154466 - 4154408
Alignment:
| Q |
194 |
ctgtcagcaccacacctcttcctcacaaccaccatcatctgtcgtcacctccagtcgtc |
252 |
Q |
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| T |
4154466 |
ctgtcagcaccacacctcttcctcacaaccaccatcatcaatcatcacctcccgtcgtc |
4154408 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4229299 - 4229340
Alignment:
| Q |
1 |
cgtgccccattctctcctctgtttagtttctctcagaactga |
42 |
Q |
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| T |
4229299 |
cgtgccccattctctcctctgtttagtttctctcagaactga |
4229340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 4229526 - 4229574
Alignment:
| Q |
195 |
tgtcagcaccacacctcttcctcacaaccaccatcatctgtcgtcacct |
243 |
Q |
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| T |
4229526 |
tgtcagcaccacacctcttcctcacaaccaccatcatctatcatcacct |
4229574 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 53305018 - 53304980
Alignment:
| Q |
194 |
ctgtcagcaccacacctcttcctcacaaccaccatcatc |
232 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
53305018 |
ctgtcagcaccacacctcttcctcacaatcaccatcatc |
53304980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 53305224 - 53305190
Alignment:
| Q |
8 |
cattctctcctctgtttagtttctctcagaactga |
42 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
53305224 |
cattctctcttctgtttagtttctctcagaactga |
53305190 |
T |
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