View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_35 (Length: 294)
Name: NF8966_low_35
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 9590368 - 9590630
Alignment:
| Q |
12 |
ttcttcatcatgtaaagcagaacaatatgactttgaaagcacaatgactaatacatattctaagaaaaatccaaattcagaatcagaattggggattcaa |
111 |
Q |
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| T |
9590368 |
ttcttcatcatgtaaagcagaacaatatgactttgaaagcaaaatgactaatacatattctaaaaaaaatccaaattcagaatcagaattggggattcaa |
9590467 |
T |
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| Q |
112 |
caaagaaaacatttagaattggacattcgaaattgggttgtatactactggtgccacatttaagtacatcaaaaattatagcttagaggtaaatgcttat |
211 |
Q |
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| T |
9590468 |
caaagaaaacatttagaattggacattcgaaattgggttgtatactattggtgccacatttaagtacatcaaacattatagcttagaggtaaatgcttat |
9590567 |
T |
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| Q |
212 |
atttttcac-ttatatgtctcgtgttccattcccacatgatgccacagtcatttgggtgttgaacc |
276 |
Q |
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| T |
9590568 |
atttttcactttatatgtctcgtgttccattcccac---atgccacagtcatttgggtgttgaacc |
9590630 |
T |
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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 5469115 - 5468927
Alignment:
| Q |
38 |
atgactttgaaagcacaatgactaatacatattctaagaaaaatccaaattcagaatcagaattggggattcaacaaagaaaacatttagaattggacat |
137 |
Q |
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| T |
5469115 |
atgactttgtaagcacaataactaaagcat--tctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaatcatcagagttggatat |
5469018 |
T |
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| Q |
138 |
tcgaaattgggttgtatactactggtgccacatttaagtacatcaaaaattatagcttagaggtaaatgcttatatttttcacttatatgtct |
230 |
Q |
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| T |
5469017 |
tcagaattgggatacatactaatgatgcgacattta--tacatcaaacattatatcttagagataaatgcttatatttttcacttatttgtct |
5468927 |
T |
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