View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_38 (Length: 286)
Name: NF8966_low_38
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 3425640 - 3425894
Alignment:
| Q |
16 |
agtagctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgggttctcattaccagccataatg |
115 |
Q |
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| T |
3425640 |
agtagctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgggttctcattaccagccataatg |
3425739 |
T |
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| Q |
116 |
acaaggatattctcttcataaacctcgacaggtttcttagtttgagggtcactttctttgttgtccaaagcactatgatcctcatcttggttgtcccttg |
215 |
Q |
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| T |
3425740 |
acaaggatattctcttcataaaccttgacaggtttcttagtttgagggtcactttctttgttgtccaaagcactatgatcctcatcttggttgtcccttg |
3425839 |
T |
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| Q |
216 |
agagtctacaatatgagcatgctagtaccaataacgccaaggctatgagacctat |
270 |
Q |
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| T |
3425840 |
agagtctacaatatgagcatgctagtaccaataacgccaaggctatgagacctat |
3425894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 3429119 - 3429367
Alignment:
| Q |
16 |
agtagctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgggttctcattaccagccataatg |
115 |
Q |
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| T |
3429119 |
agtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggtttctcattcccagccataatt |
3429218 |
T |
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| Q |
116 |
acaaggatattctcttcataaacctcgacaggtttcttagtttgagggtcactttctttgttgtccaaagcactatgatcctcatcttggttgtcccttg |
215 |
Q |
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| T |
3429219 |
acaaggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtccccatcttggttgttccttg |
3429318 |
T |
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| Q |
216 |
agagtctacaatatgagcatgctagtaccaataacgccaaggctatgag |
264 |
Q |
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| T |
3429319 |
agagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgag |
3429367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 48749376 - 48749309
Alignment:
| Q |
71 |
acaggggtagccaagaatgttgggttctcattaccagccataatgacaaggatattctcttcataaac |
138 |
Q |
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| T |
48749376 |
acaggtgtagctaaaaacgttgggttctgatcaccagccataatgacaagaactttctcttcataaac |
48749309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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