View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_4 (Length: 800)
Name: NF8966_low_4
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 731; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 20 - 791
Target Start/End: Original strand, 16266931 - 16267704
Alignment:
| Q |
20 |
cctagaacatcagaggtaggggtgtgtaaaattgtggttaattgaaccatatcactaaactgaaccaaacatcagaggggattgttgggttggtacttgg |
119 |
Q |
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| T |
16266931 |
cctagaacatcagaggtaggggtgtgtaaaattgtggttaattgaaccatatcactaaactgaaccaaacatcagatgggattgttgggttggtacttgg |
16267030 |
T |
|
| Q |
120 |
attaattcgctactagtgagaaaaggtgacagaaatggcagttctatggcagtgcagggactctcaagtgtaagcaattgttctctccttttgttttaat |
219 |
Q |
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| T |
16267031 |
attaattcgctactagtgagaaaaggtgacaaaaatggcagttctatggcagtgcagggactctcaagtgtaagcaattgttctctccttttgttttaat |
16267130 |
T |
|
| Q |
220 |
tgtacttatggtgatttcatagggtgcttcaaagtttcaaatttcaattgatcaattggtatgcttctgatagacttgatatttctgaatctcacaaaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16267131 |
tgtacttatggtgatttcatagggtgcttcaaagtttcaaatttcaattgatcaattggtatgcttctgatagacttgatatttctgaatctcacaaaca |
16267230 |
T |
|
| Q |
320 |
acaatattactcagtctgt--taagcaaagtatcaaatcccaaccttttcagtgtcctatcagagcatctgtgcatgagctaatagcctactgaagagct |
417 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16267231 |
acaatattactcagtctgtgttaagctaagtatcaaatcccaaccttttcagtgtcctatcagagcatctgtgcatgagctaatagcctactgaagagct |
16267330 |
T |
|
| Q |
418 |
ggaaacatgctcaagatattaagtatactgggcgaaaaaccctgtcacagccagcaatatgcgttggcagaagccggtagagggttgatacaaatgcaac |
517 |
Q |
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| T |
16267331 |
ggaaacacgctcaagatattaagcatactgggcgaaaaaccctgtcacagccagcaatatgcgttggcagaagccggtagagggttgatacaaatgcaac |
16267430 |
T |
|
| Q |
518 |
attgatgcctccttctcaagtgagttgaatagagtaggcatcagcgttttcattttgttctagcccgaacagattggttctccccattagtcgacctaga |
617 |
Q |
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| T |
16267431 |
attgatgcctccttctcaagtgagttgaatagagtaggcatcagcgttttcattttgttctagcccgaacagattggttctccccattagtcgacctaga |
16267530 |
T |
|
| Q |
618 |
tactggtgaagcacttgggctcttcacagccttgcagtgggtgagagacctacagttacatgacgtggactttgagatggattcacaaacggttgtggac |
717 |
Q |
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| T |
16267531 |
tactggtgaagcacttgggctcttcacagccttgcggtgggtgagagacctacagttacatgatgtggactttgagatggattcacaaacggttgtggac |
16267630 |
T |
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| Q |
718 |
agtgtgtatgggaagaggaacatgaattcggattttggagctatcaatactgattgtcgtcttctctctgcttc |
791 |
Q |
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| T |
16267631 |
agtgtgtatgggaagaggaacatgaattcggattttggagctatcaatactgattgtcgtcttctctttgcttc |
16267704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 755
Target Start/End: Original strand, 15327267 - 15327434
Alignment:
| Q |
570 |
ttttgttctagcccgaacagattggttctccccattagtcgacctagatactggtgaagcacttgggctcttcacagccttgcagtgggtgagagaccta |
669 |
Q |
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|||||||||||||||||| |||||||| ||||| ||||||| | |||| ||||||||||||||||||| ||||||||| || |
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| T |
15327267 |
ttttgttctagcccgaactgattggttatcccctctagtcgatgttgatattggtgaagcacttgggctcctcacagcct------------------ta |
15327348 |
T |
|
| Q |
670 |
cagttacatgacgtggactttgagatggattcacaaacggttgtggacagtgtgtatgggaagaggaacatgaattcggattttgg |
755 |
Q |
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| T |
15327349 |
cagttacaaaacttggattttgagatggattcgaaattggttgtggacagtgtctatgggaagaggatcatgaatttggattttgg |
15327434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 26534448 - 26534407
Alignment:
| Q |
509 |
aaatgcaacattgatgcctccttctcaagtgagttgaataga |
550 |
Q |
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| T |
26534448 |
aaatgcaacattgatgcctctttctcaagtcagttgaataga |
26534407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 5898792 - 5898845
Alignment:
| Q |
35 |
gtaggggtgtgtaaaattgtggttaattgaaccatatcactaaactgaaccaaa |
88 |
Q |
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| T |
5898792 |
gtaggggtgtgaaaaaatgtggttacatgaaccatatcactaaactaaaccaaa |
5898845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 30981023 - 30980974
Alignment:
| Q |
39 |
gggtgtgtaaaattgtggttaattgaaccatatcactaaactgaaccaaa |
88 |
Q |
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||||||| |||| |||||||||||||||||||||| || ||||||||||| |
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| T |
30981023 |
gggtgtgcaaaaatgtggttaattgaaccatatcattatactgaaccaaa |
30980974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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