View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8966_low_45 (Length: 249)
Name: NF8966_low_45
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 3425653 - 3425447
Alignment:
| Q |
1 |
ttgttccagctacttccacttcacaagaaaatgaagtaggttcttgctcttcacaacgtagacaatgattgtgtttcattagctagtttgttggtaaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3425653 |
ttgttccagctacttccacttcacaagaaaatgaagtaggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaaagt |
3425554 |
T |
|
| Q |
101 |
catgtggtaggtgttactagtatggtgttgaagccatagaaaatccaagtccattgacagatagttggattatctacagatgttagcaaaatctcttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3425553 |
catgtggtaggtgttactagtatggtgttgaggccatagaaaatccaagtccattgacagatagttggattatctacagatgttagcaaaatctcttgaa |
3425454 |
T |
|
| Q |
201 |
ttaatct |
207 |
Q |
| |
|
||||||| |
|
|
| T |
3425453 |
ttaatct |
3425447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3429132 - 3429026
Alignment:
| Q |
1 |
ttgttccagctacttccacttcacaagaaaatgaagtaggttcttgctcttcacaacgtagacaatgattgtgtttcattagctagtttgttggtaaagt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||| || ||||||||||||| ||||||||| ||| ||||| | |
|
|
| T |
3429132 |
ttgttccaactacttccacttcacaagaaaatgaag---gttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaat |
3429036 |
T |
|
| Q |
101 |
catgtggtag |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
3429035 |
catgtggtag |
3429026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 3425407 - 3425372
Alignment:
| Q |
209 |
tttaattttccatcattcactactctctctgcttct |
244 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3425407 |
tttaatcttccatcattcactactctctctgcttct |
3425372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University