View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8966_low_47 (Length: 241)

Name: NF8966_low_47
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8966_low_47
NF8966_low_47
[»] chr8 (2 HSPs)
chr8 (79-223)||(24062359-24062503)
chr8 (1-59)||(24062317-24062375)
[»] chr7 (4 HSPs)
chr7 (114-223)||(12389837-12389947)
chr7 (114-223)||(12396012-12396122)
chr7 (140-223)||(18000011-18000095)
chr7 (5-53)||(47104431-47104479)
[»] chr6 (2 HSPs)
chr6 (130-223)||(30755069-30755162)
chr6 (130-171)||(14487565-14487605)
[»] chr4 (3 HSPs)
chr4 (119-223)||(17543461-17543565)
chr4 (119-223)||(11924133-11924235)
chr4 (121-177)||(12410461-12410518)
[»] chr2 (2 HSPs)
chr2 (119-204)||(18117577-18117661)
chr2 (119-180)||(18332364-18332425)
[»] chr5 (2 HSPs)
chr5 (123-223)||(25559468-25559568)
chr5 (124-209)||(34179050-34179136)
[»] scaffold0070 (1 HSPs)
scaffold0070 (119-174)||(46336-46391)
[»] chr3 (2 HSPs)
chr3 (140-223)||(30084302-30084385)
chr3 (130-223)||(30177710-30177803)
[»] scaffold0431 (1 HSPs)
scaffold0431 (140-176)||(14133-14169)
[»] scaffold1924 (1 HSPs)
scaffold1924 (119-183)||(1163-1228)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 24062359 - 24062503
Alignment:
Q  79 atagttaaaattattgatgactacctataacttcaatttatcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  24062359 atagttaaaattattgatgactacctataacttcaatttatcttttgctagagtctagttaagctctgattagggtatcagacatttatgtttattgtca 24062458  T
Q  179 tttattcgttgttggattttatttgatgagattatggttatgtat 223  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  24062459 tttattcattgttggattttatttgatgagattatggttatgtat 24062503  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24062317 - 24062375
Alignment:
Q  1 atacaaataataaacttgcctattaaatgtttgtagaagcccatagttaaaattattga 59  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24062317 atacaaataataaacttgcctattaaatgtttgcagaagcccatagttaaaattattga 24062375  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 12389837 - 12389947
Alignment:
Q  114 atttatcttttgctaga-gtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagatta 212  Q
    ||||| |||||||| || ||| |||||||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  12389837 atttaccttttgctcgaagtctagttaggctctagttagagtgtcagacatttatgtttattgtcatttatttgttgttggattttatttgttgagacta 12389936  T
Q  213 tggttatgtat 223  Q
    |||||||||||    
T  12389937 tggttatgtat 12389947  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 12396012 - 12396122
Alignment:
Q  114 atttatcttttgctaga-gtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagatta 212  Q
    ||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||| ||    
T  12396012 atttaccttttgctcgaagtctagttaggctctgattagagtgtcagacatttatgtttattgtcatttatctgttgttagattttatttgttgagacta 12396111  T
Q  213 tggttatgtat 223  Q
    | |||||||||    
T  12396112 tagttatgtat 12396122  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 18000011 - 18000095
Alignment:
Q  140 ggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttgga-ttttatttgatgagattatggttatgtat 223  Q
    |||||||||||||||||  | ||||||||||||||||||||||| | |||||| | ||||||| ||||||| |||||||||||||    
T  18000011 ggctctgattagggtgttgggcatttatgtttattgtcatttatccattgttgaatttttattcgatgagactatggttatgtat 18000095  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 47104431 - 47104479
Alignment:
Q  5 aaataataaacttgcctattaaatgtttgtagaagcccatagttaaaat 53  Q
    |||||| ||||||| |||||||||||||| |||||||||| ||||||||    
T  47104431 aaataagaaacttgtctattaaatgtttgaagaagcccatggttaaaat 47104479  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 30755069 - 30755162
Alignment:
Q  130 agtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgtat 223  Q
    |||| |||||||||||| ||||||||||  ||||||||||||||||| ||||||  |||||||||||||||||| ||||| |||||||||||||    
T  30755069 agtctagttaggctctggttagggtgtcgaacatttatgtttattgttatttatctgttgttggattttatttgttgagactatggttatgtat 30755162  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 14487565 - 14487605
Alignment:
Q  130 agtccagttaggctctgattagggtgtcagacatttatgttt 171  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  14487565 agtctagttaggctctgattagggtgtcag-catttatgttt 14487605  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 17543461 - 17543565
Alignment:
Q  119 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggtta 218  Q
    ||||||||| ||||| ||||||||||||||||||||||| |  ||||||||||||||| || | | |||||||||||||||||||| || |||||  |||    
T  17543461 tcttttgctcgagtctagttaggctctgattagggtgtcgggtatttatgtttattgttatctctccgttgttggattttatttgaggaaattataatta 17543560  T
Q  219 tgtat 223  Q
    |||||    
T  17543561 tgtat 17543565  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 11924133 - 11924235
Alignment:
Q  119 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggtta 218  Q
    ||||||||| ||||| ||||||||||||||||||| ||| |  |||||||||||||| || ||||   ||||| || ||||||||  |||||||||||||    
T  11924133 tcttttgctcgagtctagttaggctctgattagggagtcgggaatttatgtttattgaca-ttatctattgtt-gaatttatttgtggagattatggtta 11924230  T
Q  219 tgtat 223  Q
    |||||    
T  11924231 tgtat 11924235  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 12410461 - 12410518
Alignment:
Q  121 ttttgctagagtccagttagg-ctctgattagggtgtcagacatttatgtttattgtc 177  Q
    ||||||| ||||| ||||||| |||||||||||||||||  |||||||||||||||||    
T  12410461 ttttgctcgagtctagttagggctctgattagggtgtcaaccatttatgtttattgtc 12410518  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 18117661 - 18117577
Alignment:
Q  119 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttga 204  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||| | ||||| |||||| | ||||||||||||||||||||    
T  18117661 tcttttgctcgagtcttgttaggctctgattagggtgtcagacatttacg-ttattttcatttgtccgttgttggattttatttga 18117577  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 18332364 - 18332425
Alignment:
Q  119 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatt 180  Q
    |||||| || ||||| |||||| |||| ||||||||||||||||||||||||||||| ||||    
T  18332364 tctttttctcgagtctagttagactctaattagggtgtcagacatttatgtttattgacatt 18332425  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 25559468 - 25559568
Alignment:
Q  123 ttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgta 222  Q
    ||||| ||||| ||||||||||| |||||||||||   |||||||||||  |||||| ||| |||| |||||||||||||||||||| ||||||| ||||    
T  25559468 ttgctcgagtctagttaggctctaattagggtgtcgagcatttatgttttctgtcatctatccgtttttggattttatttgatgagactatggttttgta 25559567  T
Q  223 t 223  Q
    |    
T  25559568 t 25559568  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 34179050 - 34179136
Alignment:
Q  124 tgctagagtccagttagg-ctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgaga 209  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||||||||||| ||| ||  | ||||||||||||||| ||| |||||    
T  34179050 tgcttgagtctagttagggctctgattagggtgtcggacatttatgtttatcgtcgttattccgttgttggattttacttgttgaga 34179136  T

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Target: scaffold0070 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 46391 - 46336
Alignment:
Q  119 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttatt 174  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  46391 tcttttgctcgagtctagttaggctctgattaggatgtcagacatttatgtttatt 46336  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 30084302 - 30084385
Alignment:
Q  140 ggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgtat 223  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||| ||||| ||||||| |||||||||||| || | |||||||    
T  30084302 ggctctgattagggtgtcgaacatttttgtttattgtcttttatccgttgctggatttgatttgatgagatcatagctatgtat 30084385  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 30177710 - 30177803
Alignment:
Q  130 agtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgtat 223  Q
    |||| ||||||||||||||||||||||    ||||||| ||||||||| |||||  |||||||||||| |||||||||||  |||| |||||||    
T  30177710 agtctagttaggctctgattagggtgtggagcatttatatttattgtcttttatctgttgttggatttgatttgatgagaccatggctatgtat 30177803  T

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Target: scaffold0431 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 14133 - 14169
Alignment:
Q  140 ggctctgattagggtgtcagacatttatgtttattgt 176  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14133 ggctctgattagggtgtcggacatttatgtttattgt 14169  T

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Target: scaffold1924 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 1163 - 1228
Alignment:
Q  119 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatg-tttattgtcatttat 183  Q
    ||||||||| || || |||||||||||||||||||||||   |||||||| |||||| ||||||||    
T  1163 tcttttgctcgaatctagttaggctctgattagggtgtcgagcatttatgttttattttcatttat 1228  T

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