View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_5 (Length: 601)
Name: NF8966_low_5
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 60 - 580
Target Start/End: Complemental strand, 17508046 - 17507521
Alignment:
| Q |
60 |
tggaattcactaaaactttgaaaggtttagcaatgcattagaagaaataatatattgatattccgatgagattcaac---atgagctgcaatcttgaatc |
156 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
17508046 |
tggaattcactaagactttgaaaggtttagcaatgcattagaagaaataatatattgatatttcgaagagattcaacctgatgagctgcaatcttgaatc |
17507947 |
T |
|
| Q |
157 |
tacactagctaaagtgaatatgaagcttgtaaagaatgaagataaggagttagttgaccctacattgttcaaacaaattgtaggatcattgagatatacg |
256 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17507946 |
tacactagctgaagtgaatctgaagcttgtaaagaatgaagatgaggagttagttgatcctacattgttcaaacaaattgtacgatcattgagatatacg |
17507847 |
T |
|
| Q |
257 |
tgtaatagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataatctctcatatgcttgaagctaaaagggttatga |
356 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17507846 |
tgtaatagcaggccatatatagtttatgtctttgatataatcagtaggtttatgagtgtacctataatctctcatatacttgaagctaaaagggttatga |
17507747 |
T |
|
| Q |
357 |
gatacatcaagggaactttatactattgtatactctttcctacaaatgtcaatgaagaaaatatgaatctaattgcttactcaaataagcaagatag--a |
454 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |
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| T |
17507746 |
gatacatcaagggaactttatactatggtatactctttcctacaaatgtcaatgaagaaaatatgaatctaattgcttactcagaaaagcaagatagaaa |
17507647 |
T |
|
| Q |
455 |
aagtactttaggatacttgtttatgtttatgaattatccaatatcatggtgtacaaagaaacaacttatggtagccttctcaacatgtgaatcagaatat |
554 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17507646 |
aagtactttaggatacttgtttatgtttatgaattatccaatatcatggtgtacaaagaaacaacttatggtagccttctcaacatgagaatcagaatat |
17507547 |
T |
|
| Q |
555 |
ataacaggttgtttagcagcatgtca |
580 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
17507546 |
atagcaggttgtttagcagcatgtca |
17507521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 127 - 375
Target Start/End: Original strand, 1831752 - 1832003
Alignment:
| Q |
127 |
gagattcaacatga---gctgcaatcttgaatctacactagctaaagtgaatatgaagcttgtaaagaatgaagataaggagttagttgaccctacattg |
223 |
Q |
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|||||||||||||| ||| ||||| || |||||||| | || |||||||| | ||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
1831752 |
gagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaagatgaagagctagttgaccctacattg |
1831851 |
T |
|
| Q |
224 |
ttcaaacaaattgtaggatcattgagatatacgtgtaatagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataa |
323 |
Q |
| |
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||||||||||| ||| ||| |||||||| |||||||||||| |||||||| ||||| ||| ||||||| ||||||||| | ||| | || || |
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| T |
1831852 |
atcaaacaaattatagaatctctgagatatctgtgtaatagcagaccatatataatttatcatgttggtataatctgtaggtttaagagtgaagttagaa |
1831951 |
T |
|
| Q |
324 |
tctctcatatgcttgaagctaaaagggttatgagatacatcaagggaacttt |
375 |
Q |
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||||||| | ||| | ||||||| ||||||||| |||||||||||||||| |
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| T |
1831952 |
gctctcattttcttacaactaaaagagttatgagaaacatcaagggaacttt |
1832003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 23428478 - 23428366
Alignment:
| Q |
261 |
atagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataatctctcatatgcttgaagctaaaagggttatgagata |
360 |
Q |
| |
|
|||||||| |||||||||| |||| ||| ||||||||| ||||| ||| ||| ||||| || |||||| |||||| |||||||| | ||||||| |
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| T |
23428478 |
atagcaggccatatatagtctatgatgttggtataatcagcaggttcatgagtgaacctagaagctctcacttgcttgcagctaaaacaatgatgagatg |
23428379 |
T |
|
| Q |
361 |
catcaagggaact |
373 |
Q |
| |
|
||||||||||||| |
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|
| T |
23428378 |
catcaagggaact |
23428366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 234 - 373
Target Start/End: Complemental strand, 15490397 - 15490258
Alignment:
| Q |
234 |
ttgtaggatcattgagatatacgtgtaatagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataatctctcatat |
333 |
Q |
| |
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||||||| |||||||||||| |||||||||| | ||||||||||||| ||| ||||||||||||||||||| || ||||| || |||||||| |
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| T |
15490397 |
ttgtagggtcattgagatatctgtgtaatagccaacctgatatagtttatgttgttgttataatcagtaggtttatgactgaacctagaaaatctcatat |
15490298 |
T |
|
| Q |
334 |
gcttgaagctaaaagggttatgagatacatcaagggaact |
373 |
Q |
| |
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||| |||||||||| |||||| |||| |||||||||||| |
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| T |
15490297 |
acttaaagctaaaagagttatgtgatagatcaagggaact |
15490258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 6240250 - 6240301
Alignment:
| Q |
468 |
tacttgtttatgtttatgaattatccaatatcatggtgtacaaagaaacaac |
519 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
6240250 |
tacttgtttaagtttatgaatgctccaatatcatggtgtacaaagaaacaac |
6240301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 348
Target Start/End: Original strand, 30065386 - 30065549
Alignment:
| Q |
185 |
gtaaagaatgaagataaggagttagttgaccctacattgttcaaacaaattgtaggatcattgagatatacgtgtaatagcaggtcatatatagtttatg |
284 |
Q |
| |
|
||||||||||| || ||||||| ||||| ||||||| ||| |||||||||||||||| ||||||| || ||| |||| | | || ||||| ||||| |
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| T |
30065386 |
gtaaagaatgatgacgaggagttggttgattctacatttttctaacaaattgtaggatccttgagatgtaagtgcaataactagccaactatagcttatg |
30065485 |
T |
|
| Q |
285 |
tctttgatataatcagtaggtttatgtgtgtacctataatctctcatatgcttgaagctaaaag |
348 |
Q |
| |
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| ||| ||||||||| ||||| ||| ||| ||||| || ||||||| | |||| |||| |||| |
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| T |
30065486 |
ttgttggtataatcagcaggttcatgagtgaacctagaagctctcatctacttgtagctgaaag |
30065549 |
T |
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