View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8966_low_7 (Length: 600)
Name: NF8966_low_7
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 30314707 - 30315296
Alignment:
| Q |
1 |
agccaccaaacaacatcaaaaccacccaaaccacaaccccaacagaacttgctttggacggagacggtgccggagaatccacataggtcaacggaatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30314707 |
agccaccaaacaacatcaaaaccacccaaaccacaaccccaacagaacttgctttggacggagacggtgccggagaatctacataggtcaacggaatctt |
30314806 |
T |
|
| Q |
101 |
aggaggtgacgcacttgccggaggctgagatggtggcacagccgtgacattaggtgtgacattagggcgaacagccatgacttgaacagtcatcttttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30314807 |
aggaggtgacgcacttgccggaggctgagatggtggcacagccgtgacattaggtgtgacattagggcgaacagccatgacttgaacaatcatcttttca |
30314906 |
T |
|
| Q |
201 |
tcatgcttgcagttgtcagcattgccactgatgaaataatagaaacccgagtcactcagcttaaacttggaattaccattgtccaatttttgttttggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30314907 |
tcatgcttgcagttgtcagcattgccactgatgaaataatagaaacccgagtcactcagcttaaacttggaattaccattgtccaatttttgttttggat |
30315006 |
T |
|
| Q |
301 |
tgttggtgttgcaagaatcatagtcttctttcttcaccacaagaaccgaatcattccctttaacgtacttgaaatctgcagcatttttcaaaataataac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
30315007 |
tgttggtgttgcaagaatcatagtcttctttcttcaccacaagaaccgaatcattccctttaacgtacttgaaatctgcaacatttttcaaaataaaaac |
30315106 |
T |
|
| Q |
401 |
aacgttacaagttattaaaagagtatataataataaataatactcgtaaaatgattgtaatgttggggattaacaatgaatattggactcacggagagtg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
30315107 |
aacgttacaagttattaaaagagtatataataataaataatactcgtaaaatgattgtaatgttgaggattaacaatga--attggactcacggagagtg |
30315204 |
T |
|
| Q |
501 |
tcattgactcgaaatctatgtgttcgagcccactgattgtagtcttcagaaggattcacgacccaaccatctttgccaccaacacgaaactc |
592 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30315205 |
tcattgactcgaaacctatgtgttcgagcccactgattgtagtcttcagaaggattcacgacccaaccatctttgccaccaacatgaaactc |
30315296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University