View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8967_low_1 (Length: 462)
Name: NF8967_low_1
Description: NF8967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8967_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 15689727 - 15689285
Alignment:
| Q |
1 |
ccaccgggatcgaaacatctgagattgcttaaacgcagaaccactgattgtgcatgcatactagttgtcgaaggtgatgattgcttttctgaagatgcgc |
100 |
Q |
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| T |
15689727 |
ccaccgggatcaaaacatctgagattgcttaaacgcagaacgactgattgtgcatacatactagttgtcgaaggtgatgattgcttttctgaagatgcgc |
15689628 |
T |
|
| Q |
101 |
tcaatccaactagaaaatttcaaggagagattgaaaaaccttttggttgtcgcacaaccaatggcacaattgttgcagtaattggttgtttgatggttca |
200 |
Q |
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| T |
15689627 |
tcaatccaactagaaaatttcaaggagagattgaaaaaccttttggttgtcgcacaaccaatggcacaattgttgccgtaattggttgtttgatggttca |
15689528 |
T |
|
| Q |
201 |
acaacgtggctatcaactgcttcggcagcatttgatcaaacccttgaagggaataacacaacttttcaagtccaggtgcattacccatcctattcatggg |
300 |
Q |
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| T |
15689527 |
acaacgtggctatcaactgcttcggcagcatttgatcaaacccttgaagggaataacacaacttttcaagtccaagtgcattacccatcctattcatggg |
15689428 |
T |
|
| Q |
301 |
tttcaagagagatgttgattaatggattcggtacaagaaaattttccataacactcttatgctttaatcaatatccctcattgctattttaatattctta |
400 |
Q |
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| T |
15689427 |
tttcaagagagatgttgattaatggattcagtacaagaaaattttccataaca--cttatgctttaatcaatatccctcattgctattttaatattctta |
15689330 |
T |
|
| Q |
401 |
tgctttaattgaaaatgatctaaagtaagaggttcatcacatagg |
445 |
Q |
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| T |
15689329 |
tgctttaattgaaaatgatctaaagtaagaggttcatcacatagg |
15689285 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 55286831 - 55286909
Alignment:
| Q |
367 |
atcaatatccctcattgctattttaatattcttatgcttta--attgaaaatgatctaaagtaagaggttcatcacata |
443 |
Q |
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||||||||||||| || |||| |||| |||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
55286831 |
atcaatatccctcgttactatcttaacattcttatgctttataattgaaaatgattcaaagtaagaggctcatcacata |
55286909 |
T |
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