View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8967_low_11 (Length: 222)
Name: NF8967_low_11
Description: NF8967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8967_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 43601739 - 43601923
Alignment:
| Q |
15 |
aacctgtggttattataattttaatgatgctttgtgcgaagttgcaatggcaattggcaaatgctgatataaatctgggcatatgctagactgagtacaa |
114 |
Q |
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| T |
43601739 |
aacctgtggttattataattttaatgatgctttgtgcgaagttgcattggcaattggcaaatgctgctataaatctgggcatatgctagactgagtacaa |
43601838 |
T |
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| Q |
115 |
ctgaaagggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg |
199 |
Q |
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| T |
43601839 |
ctgaaagggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg |
43601923 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 22239135 - 22239086
Alignment:
| Q |
150 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg |
199 |
Q |
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| T |
22239135 |
atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccg |
22239086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 37560653 - 37560604
Alignment:
| Q |
150 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg |
199 |
Q |
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| T |
37560653 |
atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccg |
37560604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 22436340 - 22436299
Alignment:
| Q |
150 |
atgatatcttcaaattatgaaaattatttctgcaccaaaaca |
191 |
Q |
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| T |
22436340 |
atgatatcttaaaattatgaaaatgatttctgcaccaaaaca |
22436299 |
T |
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