View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8967_low_3 (Length: 446)
Name: NF8967_low_3
Description: NF8967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8967_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 107 - 433
Target Start/End: Complemental strand, 26398830 - 26398504
Alignment:
| Q |
107 |
acataagcttaagtgatatgtttgagcatcgggctttggcaacttcattttctaaagaatttgaattgaaaaattaaagctcaggtcattcgtaaatttt |
206 |
Q |
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| T |
26398830 |
acataagcttaagtgatatgtttgagcatagggctttggcaacttcattttctaaagaatttgaattgaaaaattaaagctcaggtcattcgtaaatttt |
26398731 |
T |
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| Q |
207 |
ttacgatagtttgattcgcaccataccgcatttttattaaacatattagacattgtagtaagtttgttatttcaggttaagttgcaattagactccgttc |
306 |
Q |
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| T |
26398730 |
ttacgatagtttgattcgcaccatacagcatttctattaaacatattagatattgtagtaagtttgttatttcagtttaagttgcaattagactccgttc |
26398631 |
T |
|
| Q |
307 |
aaaattatttggagatgtacaattttaatatgtgttgaggatattgataatttcaaaaatgaacttgttaaattatgattctttcaagnnnnnnnttatg |
406 |
Q |
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| T |
26398630 |
aaaattatttggagatgtacaattttaatatgtgttgaggatgtttataatttcaaaaatgaacttgttaaattatgattctttcaagaaaaaaattatg |
26398531 |
T |
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| Q |
407 |
atcatttgtccaatattttcaacattt |
433 |
Q |
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| T |
26398530 |
atcatttgtccaatattttcgacattt |
26398504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 52709290 - 52709404
Alignment:
| Q |
109 |
ataagcttaagtgatatgtttgagcatcggg----ctttggcaacttcattttctaaagaatttgaattgaaaaattaaagctcaggtcattcgtaaatt |
204 |
Q |
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| T |
52709290 |
ataagcttaagtgatatgtttgagcatagggggggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtgggtt |
52709389 |
T |
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| Q |
205 |
ttttacgatagtttg |
219 |
Q |
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| T |
52709390 |
ttttacgatagtttg |
52709404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26398936 - 26398891
Alignment:
| Q |
1 |
tgacggaaaatatttgagtatcaaaacttgctgaatttttgtaggg |
46 |
Q |
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| T |
26398936 |
tgacggaaaatatttgagtatcaaaacttgctgaatttttgtaggg |
26398891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 52709182 - 52709227
Alignment:
| Q |
1 |
tgacggaaaatatttgagtatcaaaacttgctgaatttttgtaggg |
46 |
Q |
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| T |
52709182 |
tgacggaaaatatttgagtatcaatacttgctgattttttttaggg |
52709227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 32204142 - 32204108
Alignment:
| Q |
145 |
gcaacttcattttctaaagaatttgaattgaaaaa |
179 |
Q |
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| T |
32204142 |
gcaacttcattttctaaagaattttaattgaaaaa |
32204108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 9459912 - 9459880
Alignment:
| Q |
148 |
acttcattttctaaagaatttgaattgaaaaat |
180 |
Q |
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| T |
9459912 |
acttcattttctatagaatttgaattgaaaaat |
9459880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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