View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8967_low_5 (Length: 434)
Name: NF8967_low_5
Description: NF8967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8967_low_5 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 211 - 422
Target Start/End: Original strand, 8042 - 8253
Alignment:
| Q |
211 |
ctttgcaacgtgtttcttcattcaatttgtcatccaaccactttttcactatgcaggaaacaattctgctgtaatgctgattttgtgtccttgaattctt |
310 |
Q |
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| T |
8042 |
cttttcaacgtgtttcttcattcaatttgtcatccaaccactttttcactatgcaggaaacaattctgttgtaaagctgattttgtgtccttgaattctt |
8141 |
T |
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| Q |
311 |
taatgtcagtgtgtctgatttacatgaattatgttttgttttcaaactgtgaaagtgaatttatatatctatattttgaaaatacgtgatttggtggaaa |
410 |
Q |
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| T |
8142 |
taatgtcagtgtgtctgatttacatgaattatgttttgttttcaaactgtgaaagtgaatttatatatctatattttgaaaatacgtgatttggtggaaa |
8241 |
T |
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| Q |
411 |
acatggtccaag |
422 |
Q |
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|||||||||||| |
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| T |
8242 |
acatggtccaag |
8253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 7762 - 7984
Alignment:
| Q |
1 |
gagttatatttcactatcactgcatccgtaattgattggtgagtctggtgaccctaattgcagttaatacaaggaatctcaacattttttgtttaaacac |
100 |
Q |
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| T |
7762 |
gagttatatttcactatcactgcatccgtaattgattggtgagtctggtgaccctaattgcagttaatacaaggaatctcaacattttttgtttaaacac |
7861 |
T |
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| Q |
101 |
aaaaagagaataataatgatccatcaaagctttgaaac---------tagcatgctttgatgtggacattcgatccttatgtggaagtgaattaatgaac |
191 |
Q |
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| T |
7862 |
aaaaagagaataataatgatccatcaaagctttgaaactagcataattagcatgctttgatgtggacattcgatccttatgtggaagtgaattaatgaac |
7961 |
T |
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| Q |
192 |
tcttgggccacctagaattcttt |
214 |
Q |
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| T |
7962 |
tcttgggccacctagaattcttt |
7984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 48704456 - 48704552
Alignment:
| Q |
221 |
tgtttcttcattcaatttgtcatccaaccactttttcactatgcaggaaacaattctgctgtaatgctgattttgtgtccttgaattctttaatgtc |
317 |
Q |
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| T |
48704456 |
tgtttcatcattcaatctgtcaacataccactttttcattgtgcaagtcacaattttgctataatgctgattttgtgtccttggattatttattgtc |
48704552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 48913192 - 48913232
Alignment:
| Q |
370 |
tttatatatctatattttgaaaatacgtgatttggtggaaa |
410 |
Q |
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| T |
48913192 |
tttatatatctatattcttaaaatacgtgatttggtggaaa |
48913232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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