View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8967_low_6 (Length: 394)
Name: NF8967_low_6
Description: NF8967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8967_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 34284153 - 34284389
Alignment:
| Q |
18 |
tgttggtatatattctcactttttcgctgttcaagatcagtaccatcaaagcagttgtattccttctttttaacatgacgcctcccaagaaagcctctta |
117 |
Q |
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| T |
34284153 |
tgttggtatatattctcactttttcgctgttcaagatcagtaccatcaaagcagttgtattccttctttttaacatgacgcctcccaagaaagcctctta |
34284252 |
T |
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| Q |
118 |
gcctcatggatttcctttcccctggatgtgtatgaatctatcttctttgagtgattgagggaatctgacttaagctcatgtgattgagggactctgactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34284253 |
gcctcatggatttcctttcccctggatgtgtatgaatctatcttctttgagtgattgagggaatctgacttaagctcatgtgattgagggactctgactt |
34284352 |
T |
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| Q |
218 |
aagtttgtggatttcactgcaaatcgttttgaagaca |
254 |
Q |
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| T |
34284353 |
aagtttgtggatttcactgcaaatcgttttgaagaca |
34284389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 34284429 - 34284518
Alignment:
| Q |
294 |
agttatcagcaaagtctagagctcctattgaactgttacatcatataaacacaaactgttgttataggcttgtattgaactagtgatgat |
383 |
Q |
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| T |
34284429 |
agttatcagcaaagtccagagctcctattgaactgttacatcatataaacacaaactgttgttgtaggcttgtattgaactagtgatgat |
34284518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 12721926 - 12721818
Alignment:
| Q |
18 |
tgttggtatatattctcactttttcgctgttcaagatcagtaccatcaaagcagttgtattccttctttttaacatgacgcctcccaagaaagcctctta |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12721926 |
tgttggtatatatactcactttttcgctgttcaagattactaccatcaaagcagttgtattccttctttttaacatgacgcctcccaagaaagcctctta |
12721827 |
T |
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| Q |
118 |
gcctcatgg |
126 |
Q |
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||||||||| |
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| T |
12721826 |
gcctcatgg |
12721818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 12721643 - 12721592
Alignment:
| Q |
147 |
gtatgaatctatcttctttgagtgattgagggaatctgacttaagctcatgt |
198 |
Q |
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|||||| | |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12721643 |
gtatgagtttatcttcttttagtgattgagggaatctgacttaagctcatgt |
12721592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 12721523 - 12721490
Alignment:
| Q |
306 |
agtctagagctcctattgaactgttacatcatat |
339 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
12721523 |
agtctagagctcctattgaactattacatcatat |
12721490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 30024976 - 30024870
Alignment:
| Q |
18 |
tgttggtatatattctcactttttcgctgttcaagatcagtaccatcaaagcagttgtattccttctttttaacatgacgcctcccaagaaagcctctta |
117 |
Q |
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||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |
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| T |
30024976 |
tgttggtatatatactcacttttccgctgttcaagattagtaccatcaaagcagtcgttttgcttctttttaacatgacgcctcccaagaaagcgtctta |
30024877 |
T |
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| Q |
118 |
gcctcat |
124 |
Q |
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||||||| |
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| T |
30024876 |
gcctcat |
30024870 |
T |
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