View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8967_low_7 (Length: 392)

Name: NF8967_low_7
Description: NF8967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8967_low_7
NF8967_low_7
[»] chr5 (3 HSPs)
chr5 (32-375)||(28136656-28137003)
chr5 (34-85)||(43208289-43208340)
chr5 (52-85)||(18607112-18607145)
[»] chr8 (3 HSPs)
chr8 (44-90)||(37225753-37225799)
chr8 (34-82)||(14227215-14227263)
chr8 (52-90)||(3508063-3508101)
[»] chr6 (8 HSPs)
chr6 (48-90)||(27661743-27661785)
chr6 (52-90)||(10157995-10158033)
chr6 (51-89)||(26650236-26650274)
chr6 (51-89)||(26756204-26756242)
chr6 (56-90)||(28783012-28783046)
chr6 (52-85)||(12627831-12627864)
chr6 (52-85)||(13689208-13689241)
chr6 (49-90)||(29449689-29449730)
[»] chr2 (4 HSPs)
chr2 (45-90)||(44605149-44605194)
chr2 (48-90)||(22131264-22131306)
chr2 (52-89)||(10250737-10250774)
chr2 (28-64)||(36700176-36700212)
[»] chr3 (1 HSPs)
chr3 (49-88)||(45382751-45382790)
[»] chr7 (5 HSPs)
chr7 (52-90)||(36314637-36314675)
chr7 (44-90)||(37775985-37776031)
chr7 (52-90)||(44172900-44172938)
chr7 (49-90)||(43160492-43160533)
chr7 (36-88)||(31753774-31753826)
[»] chr4 (1 HSPs)
chr4 (52-90)||(44796972-44797010)
[»] chr1 (4 HSPs)
chr1 (44-86)||(17080895-17080937)
chr1 (52-90)||(43609828-43609866)
chr1 (44-86)||(43942327-43942369)
chr1 (48-88)||(23605132-23605172)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 32 - 375
Target Start/End: Original strand, 28136656 - 28137003
Alignment:
Q  32 ctacacatcaataccaatagtaatttgagaaaataacatatttcaatgtaatcacatgtcagaca---atgcttgtcggatacgagacacgccttcgatc 128  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||    
T  28136656 ctacacatcaataccaatagtaatttaagaaaataacatatttcaatgtaatcacatgtcagacactaatgcttgtcggatactagacacgccttcgatc 28136755  T
Q  129 tactactcttcactcacactcactcaacaatccaataacacatttatgattcaaatttcaaattgatttcaacctaaaaactaaaacaaacatataaatt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136756 tactactcttcactcacactcactcaacaatccaataacacatttataattcaaatttcaaattgatttcaacctaaaaactaaaacaaacatataaatt 28136855  T
Q  229 ccaattcaatcaactaatacttgatttaatcac-aaaaaacaatactaaaatcatagctggaattgaacacttacatgaatgtgaacgcaactgaaatac 327  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28136856 ccaattcaatcaactaatacttgatttaatcacaaaaaaacaatactaaaatcatagctggaattgaacacttacatgaatgtgaacgcaactgcaatac 28136955  T
Q  328 acaaaaacaagaagagacggagaaaattaaaggcaaaaggttccatat 375  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||    
T  28136956 acaaaaacaagaagagaaagagaaaattaaaggcaaaaggttccatat 28137003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 43208340 - 43208289
Alignment:
Q  34 acacatcaataccaatagtaatttgagaaaataacatatttcaatgtaatca 85  Q
    ||||||||| ||| |||||||||||||||||| ||||| |||||||||||||    
T  43208340 acacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 18607145 - 18607112
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatca 85  Q
    |||||||||||||||||||| |||||||||||||    
T  18607145 taatttgagaaaataacataattcaatgtaatca 18607112  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 37225799 - 37225753
Alignment:
Q  44 accaatagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    ||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  37225799 accaataataatttgagaaaataacataattcaatgtaatcatatgt 37225753  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14227215 - 14227263
Alignment:
Q  34 acacatcaataccaatagtaatttgagaaaataacatatttcaatgtaa 82  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||||    
T  14227215 acacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 3508063 - 3508101
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  3508063 taatttgagaaaataacataattcaatgtaatcatatgt 3508101  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 27661743 - 27661785
Alignment:
Q  48 atagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  27661743 atagtaatttaagaaaataatatatttcaatgtaatcacatgt 27661785  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 10157995 - 10158033
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgt 10158033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 26650274 - 26650236
Alignment:
Q  51 gtaatttgagaaaataacatatttcaatgtaatcacatg 89  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacatg 26650236  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 26756242 - 26756204
Alignment:
Q  51 gtaatttgagaaaataacatatttcaatgtaatcacatg 89  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacatg 26756204  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 28783046 - 28783012
Alignment:
Q  56 ttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    ||||||||||||||||||| |||||||||||||||    
T  28783046 ttgagaaaataacatatttgaatgtaatcacatgt 28783012  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 12627864 - 12627831
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatca 85  Q
    |||||| |||||||||||||||||||||||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatca 12627831  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 13689241 - 13689208
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatca 85  Q
    |||||||||||||||||| |||||||||||||||    
T  13689241 taatttgagaaaataacaaatttcaatgtaatca 13689208  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 29449689 - 29449730
Alignment:
Q  49 tagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    ||||||||| ||||||||||||| || |||||||||||||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgt 29449730  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 44605194 - 44605149
Alignment:
Q  45 ccaatagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||    
T  44605194 ccaataataatttgagaaaataacataattcaatgtaattacatgt 44605149  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 22131306 - 22131264
Alignment:
Q  48 atagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  22131306 atagtaatttgagaaaatgacattgttcaatgtaatcacatgt 22131264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 10250737 - 10250774
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatg 89  Q
    |||||||||||||||||| | |||||||||||||||||    
T  10250737 taatttgagaaaataacacaattcaatgtaatcacatg 10250774  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 36700176 - 36700212
Alignment:
Q  28 gacactacacatcaataccaatagtaatttgagaaaa 64  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  36700176 gacactacacatcaataccgatattaatttgagaaaa 36700212  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 45382751 - 45382790
Alignment:
Q  49 tagtaatttgagaaaataacatatttcaatgtaatcacat 88  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacat 45382790  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 36314675 - 36314637
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  36314675 taatttgagaaaatgacatatttcaatgtaatcatatgt 36314637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 37775985 - 37776031
Alignment:
Q  44 accaatagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||| ||||||||||||||||| ||||| || |||||||||||||||    
T  37775985 accagtagtaatttgagaaaatgacataattaaatgtaatcacatgt 37776031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 44172938 - 44172900
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  44172938 taatttgagaaaatgacataattcaatgtaatcacatgt 44172900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 43160492 - 43160533
Alignment:
Q  49 tagtaatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    ||||||||| ||||||||||||| || |||||||||||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgt 43160533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 31753826 - 31753774
Alignment:
Q  36 acatcaataccaatagtaatttgagaaaataacatatttcaatgtaatcacat 88  Q
    ||||| |||||| ||||||||||||||||| | ||| || |||||||||||||    
T  31753826 acatcgataccagtagtaatttgagaaaattaaataattgaatgtaatcacat 31753774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 44797010 - 44796972
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  44797010 taatttgagaaaataacataattcaatgtaattacatgt 44796972  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 17080937 - 17080895
Alignment:
Q  44 accaatagtaatttgagaaaataacatatttcaatgtaatcac 86  Q
    ||||||| |||||||||||||||||||| || |||||||||||    
T  17080937 accaataataatttgagaaaataacataattgaatgtaatcac 17080895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 43609866 - 43609828
Alignment:
Q  52 taatttgagaaaataacatatttcaatgtaatcacatgt 90  Q
    |||||||||||||||||||| || |||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacatgt 43609828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 43942327 - 43942369
Alignment:
Q  44 accaatagtaatttgagaaaataacatatttcaatgtaatcac 86  Q
    ||||||| | |||||||||||||||||| ||||||||||||||    
T  43942327 accaataatgatttgagaaaataacataattcaatgtaatcac 43942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 23605172 - 23605132
Alignment:
Q  48 atagtaatttgagaaaataacatatttcaatgtaatcacat 88  Q
    |||||||||||||||||||||| | || |||||||||||||    
T  23605172 atagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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