View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_high_9 (Length: 381)
Name: NF8968_high_9
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 71 - 365
Target Start/End: Complemental strand, 7783336 - 7783041
Alignment:
| Q |
71 |
tttattggaatggcatcgatgactttgttgaacaatgacccaagagttcactaccattatgatttaatccgattctaccattgtaactgatttgtttgtt |
170 |
Q |
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| T |
7783336 |
tttattggaattgcatcgatgactttgttgaacaatgacccaaaagttcactaccattatgatttaatccgattctaccattgtaactgatttgtttgtt |
7783237 |
T |
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| Q |
171 |
tcgtcaagcagattcaacaatttcaaagtttcagttggaatatttacatactcttagatacatggacattgatgattttaactcaaacattttttacaag |
270 |
Q |
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| T |
7783236 |
tcgtcaagcagattcaacaatttcaaagtttcagttggaatatttacatactcttggatacatggacattgatgattttaactcaaacattttttacaag |
7783137 |
T |
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| Q |
271 |
accccaaaatttcacgtggtttatcaggtggaa-ttgaccaatgataaaaatgactagtaaaagatcaaattattccccatatctaggttgactat |
365 |
Q |
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| T |
7783136 |
atcccaaaatttcacgtggtttatcaggtggaatttgaccaatgataaaaatgaccggtaaaagatcaaattattccccatatctaggttgactat |
7783041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7783686 - 7783629
Alignment:
| Q |
17 |
gttatgtttatgataacatgttggtttatttggaagtctacgaatgatgtagtattta |
74 |
Q |
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| T |
7783686 |
gttatgtttatgataacatgttggtatatttggaagtctatgaatgatttagtattta |
7783629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 37741552 - 37741617
Alignment:
| Q |
106 |
tgacccaagagttcactaccattatgatttaatccgattctaccattgtaactgatttgtttgttt |
171 |
Q |
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| T |
37741552 |
tgactcaagagttcattaccattataattgattccgattctaccattgtaaccgaattgtttgttt |
37741617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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