View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_1 (Length: 913)
Name: NF8968_low_1
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 812; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 13 - 896
Target Start/End: Complemental strand, 16300695 - 16299812
Alignment:
| Q |
13 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300695 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
16300596 |
T |
|
| Q |
113 |
gacaaaccaactgcttcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatatcactaaatgtc |
212 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16300595 |
gacaaaccaactgctgcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatataactaaatgtc |
16300496 |
T |
|
| Q |
213 |
ttatccttcaatgttttctaaaaaatggccccaaccaaaccattctctcatatccagctattgagggttctagtttggttccggttagctctagatttaa |
312 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16300495 |
ttatccttcaatgttttttaaaaaatggccccaaccaaaccattctttcatatccagctgttgagggttctagtttggttccggttagctctagatttaa |
16300396 |
T |
|
| Q |
313 |
ccagcttgcttgtaggaagtctttggcagtttatataattttagatgagaagccatttaggacagttgagggagaaggatttaaacactacagtaatacg |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300395 |
ccagcttgcttgtaggaagtctttggcagtttatatagttttagatgagaagccatttaggacagttgagggagaaggatttaaacactacagtaatacg |
16300296 |
T |
|
| Q |
413 |
atgcaacctttgtttattattccttctaggaggacaattgccagggattgttttcagttgtacttggatgaaaaactaaaattaaaagctttctttcagt |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
16300295 |
atgcaacctttgtttattattccttctaggaggacaattgccagggattgttttcagttgtacttggatgaaaaactaaaattaaaagatttctttaagt |
16300196 |
T |
|
| Q |
513 |
ctgactgcaatagggtagcacttactaccgattgttagacctctcttcaaaaccttaactacttgacccttatggcacattttgtggataatgattggaa |
612 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16300195 |
ctgactgcaaaagggtagcacttactaccgattgttggacctctcttcaaaaccttaactacttgacccttacggcacattttgtggataatgattggaa |
16300096 |
T |
|
| Q |
613 |
gtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtaggtaggaagattgaagaggtgttaagggattgggggattaga |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300095 |
gtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtaggtaggaagattgaagaggtgttaagggattgggggattaga |
16299996 |
T |
|
| Q |
713 |
tgtgtgtcctctgtaactgttgataatgcatcagctaatgatgtagccgtgacatatttgnnnnnnnngattaaaacaatgaatgggctgatgggggatg |
812 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16299995 |
tgtgtgtcatctgtaactgttgataatgcatcagctaatgatgtagccgtgacatatttgaaaaaaaagattaaaacaatgaatgggctgatgggggatg |
16299896 |
T |
|
| Q |
813 |
ggtcttatttccatatgaggtgttgttcacatatcttgaacttggtggttttggatggtttgaaagaaaaacatacctccatta |
896 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16299895 |
ggtcttatttccatatgaggtgttgttcacatatcttgaacttggtggttttggatggtttgaaagaaaaacatacctccatta |
16299812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 804; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 13 - 896
Target Start/End: Complemental strand, 22898192 - 22897309
Alignment:
| Q |
13 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22898192 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggaaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
22898093 |
T |
|
| Q |
113 |
gacaaaccaactgcttcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatatcactaaatgtc |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
22898092 |
gacaaaccaactgctgcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccattaacttgaacacacatattactaaatgtc |
22897993 |
T |
|
| Q |
213 |
ttatccttcaatgttttctaaaaaatggccccaaccaaaccattctctcatatccagctattgagggttctagtttggttccggttagctctagatttaa |
312 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897992 |
ttatccttcaatgttttttaaaaaatggccccaaccaaaccattttttcatatccagctattgagggttctagtttggttccggttagctctagatttaa |
22897893 |
T |
|
| Q |
313 |
ccagcttgcttgtaggaagtctttggcagtttatataattttagatgagaagccatttaggacagttgagggagaaggatttaaacactacagtaatacg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22897892 |
ccagcttgcttgtaggaagtctttggcagtttatatagttttagatgagaagccatttaggacagttgagggagaaggatttaaacactacagtaatacg |
22897793 |
T |
|
| Q |
413 |
atgcaacctttgtttattattccttctaggaggacaattgccagggattgttttcagttgtacttggatgaaaaactaaaattaaaagctttctttcagt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
22897792 |
atgcaacctttgtttattattccttctaggaggacaattgccagggattgttttcagttgtacttggatgaaaaactaaaattaaaagttttctttaagt |
22897693 |
T |
|
| Q |
513 |
ctgactgcaatagggtagcacttactaccgattgttagacctctcttcaaaaccttaactacttgacccttatggcacattttgtggataatgattggaa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
22897692 |
ctgactgcaatagggtagcacttactaccgattgttggacctctcttcaaaaccttaactacttgacccttacggcacattttgtggataatgattggaa |
22897593 |
T |
|
| Q |
613 |
gtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtaggtaggaagattgaagaggtgttaagggattgggggattaga |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22897592 |
gtatcaaaaaagaataatcagcttcgctgtaatcccaaaccacaagggtgagactgtaggtaggaagattgaagaggtgttaagggattgggggattaga |
22897493 |
T |
|
| Q |
713 |
tgtgtgtcctctgtaactgttgataatgcatcagctaatgatgtagccgtgacatatttgnnnnnnnngattaaaacaatgaatgggctgatgggggatg |
812 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
22897492 |
tgtgtgtcatctgtaactgttgataatgcatcagctaatgatgtagccgtgacatatttgaaaaaaaagattaaaacaatgaatgggctgatgggggatg |
22897393 |
T |
|
| Q |
813 |
ggtcttatttccatatgaggtgttgttcacatatcttgaacttggtggttttggatggtttgaaagaaaaacatacctccatta |
896 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22897392 |
ggtcttatttccatatgaggtgttgttcacatatcttgaacttggtggttttggatggtttgaaagaaaaacatacctccatta |
22897309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 799 - 887
Target Start/End: Complemental strand, 15978145 - 15978057
Alignment:
| Q |
799 |
gctgatgggggatgggtcttatttccatatgaggtgttgttcacatatcttgaacttggtggttttggatggtttgaaagaaaaacata |
887 |
Q |
| |
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||||||| || ||| ||||| ||| | ||||| |||||||| || |||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
15978145 |
gctgatgaggcatgtgtcttgttttcgtatgacctgttgttcccacatcttgaatttggtggttttggatggtttgaaatataaacata |
15978057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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