View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_11 (Length: 502)
Name: NF8968_low_11
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_11 |
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| [»] scaffold1211 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Original strand, 26377804 - 26378279
Alignment:
| Q |
11 |
cagagaacagtaaatgataagtttgtagatgcaaaccacataatattttctaattcagatttgaagtcatcatagaagaatggttgagtaacttcagttt |
110 |
Q |
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| T |
26377804 |
cagagaacagtaaatgataagtttgtagatgcaaaccacataatattttctaattcagatttgaagtcatcatagaagaatggttgagtaacttcagttt |
26377903 |
T |
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| Q |
111 |
atatttcttcacaatttggttaacaaaataaataacagaaacaaatattttgcaccaagtgtggagccttgaaacattttatggttgatgataggggaag |
210 |
Q |
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| T |
26377904 |
atatttcttcacaatttggttaacaaaataaataacagaaacaaatattttgcaccaagtgtggagccttgaaacattttatggttgatgataggggaag |
26378003 |
T |
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| Q |
211 |
tgctgaataatgcaaaccatattcattcttccgttagcatgtagtcatgcaccatctgctattgcaatggaaagaaatgaaacatctgtgattattagat |
310 |
Q |
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| T |
26378004 |
tgctgaataatgcaaaccgtatgcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaaagaaatgaaacatctgtgattattagat |
26378103 |
T |
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| Q |
311 |
agctctaa-ttttttgatgcaatttaagcattgcgtgattgttctgtatataatgtttgtaagtttcctgcagggttgtcactgccaggatgggaactgt |
409 |
Q |
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| T |
26378104 |
agctctaatttttttgatgcaatttaagcattgcgtgattgttctgtatataatgtttgtaagtttcctgcagggttgtcactgccaggatgggaactgt |
26378203 |
T |
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| Q |
410 |
gagagatccggtcaagcaaagcacattcattggccatctgtcgattagtagagctgtgcttcacaagcaaagagag |
485 |
Q |
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| T |
26378204 |
gagtgatccagtcaagcaaagcacattcattggccatctgtcgatcagtagagctgtgcttcacaagcaaagagag |
26378279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 2046 - 2172
Alignment:
| Q |
359 |
ataatgtttgtaagtttcctgcagggttgtcactgccaggatgggaactgtgagagatccggtcaagcaaagcacattcattggccatctgtcgattagt |
458 |
Q |
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| T |
2046 |
ataatgtttgtaagtttcctgcagagttgtcactgccgagaagggaaaagtaagagagccactcaagcaaagcacactcacaggccatctgtcgattagt |
2145 |
T |
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| Q |
459 |
agagctgtgcttcacaagcaaagagag |
485 |
Q |
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| T |
2146 |
agagctgcgcttcacaagcaaagagag |
2172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 326
Target Start/End: Original strand, 1592 - 1734
Alignment:
| Q |
183 |
aacattttatggttgatgataggggaagtgctgaataatgcaaaccatattcattcttccgttagcatgtagtcatgcaccatctgctattgcaatggaa |
282 |
Q |
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| T |
1592 |
aacatttgatagttgatgataggagaattattgaataatgcaaatcatatgggttctgcctttagcatgtagtcatgtaccatctgctattgaaatggaa |
1691 |
T |
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| Q |
283 |
agaaatgaaacatctgtgattattagatagctctaattttttga |
326 |
Q |
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| T |
1692 |
ag-aatgacacatctggaaatattagatagctctaatattttga |
1734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 1484 - 1558
Alignment:
| Q |
58 |
ttctaattcagatttgaagtcatcatagaagaatggttgagtaacttcagtttatatttcttcacaatttggtta |
132 |
Q |
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| T |
1484 |
ttctaattcagatttgaagttattatggaatagtggtcgagtaacttcagtttatatttcttcacaatttggtta |
1558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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