View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8968_low_12 (Length: 447)

Name: NF8968_low_12
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8968_low_12
NF8968_low_12
[»] chr7 (38 HSPs)
chr7 (18-342)||(41592944-41593268)
chr7 (18-336)||(41384149-41384467)
chr7 (127-336)||(41385659-41385868)
chr7 (135-336)||(41591515-41591714)
chr7 (344-428)||(44537342-44537427)
chr7 (338-428)||(43234791-43234882)
chr7 (344-414)||(28770493-28770563)
chr7 (344-416)||(7653590-7653662)
chr7 (359-416)||(21727441-21727498)
chr7 (344-428)||(27123275-27123360)
chr7 (344-409)||(28663159-28663224)
chr7 (348-416)||(3692891-3692959)
chr7 (144-336)||(706743-706935)
chr7 (337-416)||(37158369-37158448)
chr7 (351-409)||(39321009-39321067)
chr7 (344-428)||(35496593-35496678)
chr7 (344-413)||(42936024-42936092)
chr7 (351-416)||(44592880-44592945)
chr7 (344-408)||(43224107-43224171)
chr7 (144-336)||(708019-708211)
chr7 (351-406)||(35731311-35731366)
chr7 (342-428)||(27870429-27870509)
chr7 (348-416)||(25886184-25886252)
chr7 (361-416)||(35923540-35923595)
chr7 (352-406)||(10200593-10200647)
chr7 (144-226)||(33823872-33823954)
chr7 (351-416)||(29711520-29711585)
chr7 (348-416)||(18801054-18801122)
chr7 (344-416)||(26239561-26239633)
chr7 (277-336)||(27160305-27160364)
chr7 (277-336)||(27161995-27162054)
chr7 (232-336)||(46246530-46246634)
chr7 (344-393)||(14651410-14651459)
chr7 (348-409)||(27337718-27337779)
chr7 (344-416)||(32051354-32051424)
chr7 (344-416)||(40753967-40754038)
chr7 (279-343)||(45277969-45278033)
chr7 (370-406)||(47778600-47778636)
[»] chr2 (45 HSPs)
chr2 (18-343)||(43517818-43518143)
chr2 (18-334)||(40127242-40127553)
chr2 (18-269)||(42828748-42828987)
chr2 (135-336)||(43516398-43516597)
chr2 (135-337)||(40128787-40128987)
chr2 (127-333)||(10344999-10345203)
chr2 (127-344)||(42827309-42827524)
chr2 (178-346)||(22054324-22054492)
chr2 (178-336)||(44819769-44819927)
chr2 (181-337)||(22060064-22060220)
chr2 (344-428)||(19890209-19890294)
chr2 (344-416)||(9448974-9449045)
chr2 (338-428)||(4762350-4762441)
chr2 (344-416)||(31017328-31017400)
chr2 (351-415)||(31452373-31452437)
chr2 (127-334)||(42928937-42929140)
chr2 (344-428)||(1334904-1334989)
chr2 (347-416)||(15505558-15505627)
chr2 (338-412)||(29239263-29239336)
chr2 (345-419)||(34904809-34904883)
chr2 (351-416)||(14295642-14295707)
chr2 (348-413)||(20064928-20064993)
chr2 (178-336)||(44820829-44820989)
chr2 (350-428)||(38533895-38533973)
chr2 (279-337)||(10343987-10344045)
chr2 (149-336)||(18224717-18224904)
chr2 (31-126)||(31559291-31559386)
chr2 (338-416)||(41933145-41933223)
chr2 (338-410)||(1298977-1299048)
chr2 (277-341)||(28563955-28564019)
chr2 (348-415)||(11944897-11944964)
chr2 (232-344)||(40304717-40304829)
chr2 (348-409)||(13538417-13538478)
chr2 (348-409)||(19514892-19514953)
chr2 (183-243)||(42931681-42931741)
chr2 (350-401)||(38533372-38533423)
chr2 (350-409)||(43617513-43617572)
chr2 (302-336)||(6844122-6844156)
chr2 (302-340)||(16142222-16142260)
chr2 (279-333)||(22053128-22053182)
chr2 (351-416)||(7673208-7673273)
chr2 (279-336)||(28165658-28165715)
chr2 (348-412)||(8964410-8964474)
chr2 (279-347)||(34591714-34591782)
chr2 (279-331)||(44904532-44904584)
[»] chr3 (42 HSPs)
chr3 (18-333)||(31200687-31201002)
chr3 (127-334)||(24613464-24613669)
chr3 (135-337)||(31199248-31199447)
chr3 (27-269)||(27320425-27320689)
chr3 (127-269)||(27362305-27362447)
chr3 (136-237)||(44460200-44460301)
chr3 (347-418)||(22730509-22730580)
chr3 (179-335)||(24612279-24612434)
chr3 (27-122)||(27361399-27361494)
chr3 (127-333)||(33781345-33781550)
chr3 (344-428)||(42846025-42846111)
chr3 (344-400)||(24791526-24791582)
chr3 (344-414)||(29083920-29083990)
chr3 (344-416)||(12086783-12086855)
chr3 (351-415)||(16662992-16663056)
chr3 (344-416)||(51351291-51351363)
chr3 (347-410)||(26143090-26143153)
chr3 (366-409)||(48180213-48180256)
chr3 (348-409)||(26900047-26900109)
chr3 (31-77)||(27319714-27319760)
chr3 (359-416)||(52638193-52638250)
chr3 (344-416)||(49362374-49362446)
chr3 (27-74)||(27362190-27362237)
chr3 (278-336)||(32558919-32558977)
chr3 (277-338)||(5377805-5377866)
chr3 (89-130)||(34594456-34594497)
chr3 (344-408)||(40673456-40673520)
chr3 (278-333)||(32615647-32615702)
chr3 (277-336)||(33780657-33780716)
chr3 (366-417)||(35177858-35177909)
chr3 (232-336)||(41081802-41081906)
chr3 (347-406)||(42939856-42939915)
chr3 (366-409)||(45988267-45988310)
chr3 (279-338)||(55196572-55196631)
chr3 (93-130)||(1677178-1677215)
chr3 (93-130)||(13645048-13645085)
chr3 (348-428)||(39551880-39551960)
chr3 (351-416)||(52249340-52249405)
chr3 (25-76)||(31199530-31199579)
chr3 (302-346)||(31796859-31796903)
chr3 (279-338)||(32613881-32613941)
chr3 (348-408)||(47638917-47638977)
[»] chr6 (32 HSPs)
chr6 (20-336)||(19579892-19580209)
chr6 (101-336)||(19596343-19596578)
chr6 (127-336)||(19597829-19598036)
chr6 (177-336)||(11065553-11065713)
chr6 (127-337)||(842185-842393)
chr6 (127-336)||(12599897-12600104)
chr6 (127-227)||(28050212-28050312)
chr6 (178-336)||(19402022-19402181)
chr6 (177-342)||(30321064-30321229)
chr6 (344-414)||(28874415-28874485)
chr6 (338-419)||(26669293-26669374)
chr6 (344-416)||(1840997-1841069)
chr6 (128-340)||(20773294-20773504)
chr6 (179-336)||(843422-843580)
chr6 (344-410)||(32823697-32823763)
chr6 (344-416)||(2692450-2692522)
chr6 (344-416)||(17215703-17215775)
chr6 (337-416)||(30739613-30739692)
chr6 (344-406)||(31855078-31855140)
chr6 (351-421)||(7421681-7421751)
chr6 (178-337)||(7800139-7800297)
chr6 (359-416)||(27778768-27778826)
chr6 (348-409)||(3766298-3766359)
chr6 (347-404)||(9762828-9762885)
chr6 (351-416)||(23399124-23399189)
chr6 (277-336)||(7796749-7796808)
chr6 (344-414)||(5446682-5446752)
chr6 (348-416)||(9301922-9301991)
chr6 (344-405)||(30801766-30801827)
chr6 (359-416)||(1479127-1479184)
chr6 (348-409)||(19293477-19293538)
chr6 (359-412)||(34235413-34235466)
[»] chr4 (52 HSPs)
chr4 (178-336)||(55019258-55019416)
chr4 (127-336)||(4906129-4906336)
chr4 (127-336)||(4931998-4932205)
chr4 (338-428)||(51834915-51835006)
chr4 (338-421)||(50341881-50341964)
chr4 (179-337)||(4907363-4907521)
chr4 (127-336)||(29757459-29757667)
chr4 (179-336)||(29756272-29756429)
chr4 (344-416)||(35777719-35777791)
chr4 (338-428)||(50426990-50427081)
chr4 (347-421)||(31429286-31429360)
chr4 (344-418)||(41462061-41462135)
chr4 (344-428)||(8297872-8297957)
chr4 (183-268)||(38158536-38158621)
chr4 (348-416)||(37138186-37138254)
chr4 (344-416)||(47995757-47995829)
chr4 (178-334)||(22674154-22674310)
chr4 (179-336)||(4933232-4933390)
chr4 (344-428)||(7852564-7852649)
chr4 (348-428)||(45900173-45900254)
chr4 (344-416)||(49084420-49084493)
chr4 (344-428)||(49400613-49400698)
chr4 (344-428)||(7444405-7444491)
chr4 (359-428)||(20394639-20394709)
chr4 (346-416)||(37440840-37440910)
chr4 (351-421)||(51736363-51736433)
chr4 (149-333)||(39665274-39665462)
chr4 (344-416)||(34391727-34391799)
chr4 (277-335)||(23702398-23702456)
chr4 (89-336)||(23703672-23703922)
chr4 (351-416)||(25115290-25115355)
chr4 (344-428)||(27953061-27953145)
chr4 (127-243)||(7108306-7108420)
chr4 (344-416)||(53014226-53014298)
chr4 (344-399)||(8261139-8261194)
chr4 (344-399)||(8274556-8274611)
chr4 (337-416)||(31174664-31174743)
chr4 (127-335)||(35785166-35785370)
chr4 (195-334)||(35786595-35786737)
chr4 (338-428)||(37383769-37383859)
chr4 (344-416)||(24229666-24229738)
chr4 (344-400)||(36702814-36702870)
chr4 (344-416)||(42222969-42223041)
chr4 (371-416)||(23605974-23606019)
chr4 (348-416)||(23504755-23504823)
chr4 (350-428)||(24175425-24175503)
chr4 (279-333)||(22309140-22309194)
chr4 (348-401)||(39195751-39195805)
chr4 (279-336)||(2671541-2671598)
chr4 (93-130)||(2671737-2671774)
chr4 (348-421)||(31690392-31690464)
chr4 (376-416)||(23689896-23689936)
[»] chr1 (55 HSPs)
chr1 (127-336)||(52793704-52793911)
chr1 (127-346)||(42300444-42300660)
chr1 (23-336)||(27524265-27524602)
chr1 (196-336)||(9627500-9627640)
chr1 (177-338)||(8322519-8322679)
chr1 (177-336)||(31809989-31810149)
chr1 (177-336)||(8323339-8323498)
chr1 (177-336)||(31815670-31815829)
chr1 (344-428)||(47187841-47187926)
chr1 (344-428)||(39150583-39150668)
chr1 (344-420)||(2864153-2864228)
chr1 (18-130)||(28253354-28253467)
chr1 (351-419)||(44329607-44329675)
chr1 (18-122)||(37402370-37402474)
chr1 (127-336)||(28251931-28252139)
chr1 (348-428)||(38748745-38748826)
chr1 (178-335)||(9626469-9626628)
chr1 (351-428)||(8794417-8794495)
chr1 (359-416)||(39156275-39156332)
chr1 (344-401)||(43397035-43397092)
chr1 (18-74)||(28252183-28252239)
chr1 (344-416)||(38491235-38491307)
chr1 (18-128)||(37401229-37401340)
chr1 (127-240)||(28253486-28253599)
chr1 (352-428)||(34232735-34232812)
chr1 (344-428)||(48022373-48022458)
chr1 (26-130)||(9419549-9419653)
chr1 (179-336)||(26734426-26734585)
chr1 (339-410)||(44329484-44329555)
chr1 (344-428)||(44829273-44829358)
chr1 (345-401)||(604452-604508)
chr1 (344-416)||(8365517-8365589)
chr1 (350-418)||(26811258-26811326)
chr1 (364-416)||(7212787-7212839)
chr1 (345-416)||(18432974-18433045)
chr1 (359-409)||(39914640-39914690)
chr1 (127-241)||(42301469-42301581)
chr1 (371-416)||(2995018-2995063)
chr1 (351-416)||(3982279-3982344)
chr1 (348-397)||(6883152-6883201)
chr1 (359-416)||(32562388-32562445)
chr1 (359-416)||(34409748-34409805)
chr1 (26-78)||(11429486-11429538)
chr1 (376-416)||(17552847-17552887)
chr1 (348-404)||(36563730-36563786)
chr1 (359-406)||(45640571-45640618)
chr1 (279-337)||(7653685-7653743)
chr1 (279-341)||(28360764-28360826)
chr1 (96-130)||(43882249-43882283)
chr1 (279-336)||(12097942-12097999)
chr1 (279-336)||(24437074-24437131)
chr1 (279-336)||(36145344-36145401)
chr1 (344-428)||(40460743-40460828)
chr1 (26-78)||(32849676-32849728)
chr1 (277-337)||(42301620-42301680)
[»] scaffold0129 (1 HSPs)
scaffold0129 (177-336)||(4158-4316)
[»] chr8 (48 HSPs)
chr8 (128-335)||(37963275-37963481)
chr8 (127-338)||(27411091-27411301)
chr8 (127-336)||(357977-358185)
chr8 (344-429)||(35901932-35902017)
chr8 (337-416)||(4384149-4384227)
chr8 (347-409)||(167867-167929)
chr8 (348-428)||(1369883-1369964)
chr8 (344-405)||(28207649-28207710)
chr8 (344-416)||(27801246-27801318)
chr8 (27-269)||(37964378-37964641)
chr8 (364-429)||(2888760-2888826)
chr8 (364-429)||(3146036-3146102)
chr8 (344-416)||(1135175-1135247)
chr8 (347-418)||(5588972-5589043)
chr8 (344-410)||(3520828-3520894)
chr8 (179-336)||(359215-359373)
chr8 (348-409)||(33013066-33013127)
chr8 (348-416)||(37813426-37813495)
chr8 (344-428)||(42636386-42636471)
chr8 (344-416)||(24695761-24695833)
chr8 (127-269)||(27409829-27409971)
chr8 (337-421)||(12684507-12684591)
chr8 (27-128)||(27409992-27410093)
chr8 (337-416)||(9735317-9735396)
chr8 (27-77)||(37963554-37963604)
chr8 (279-349)||(39884603-39884673)
chr8 (278-335)||(21142480-21142537)
chr8 (344-416)||(12829891-12829963)
chr8 (127-243)||(21143880-21143994)
chr8 (337-416)||(12954742-12954821)
chr8 (144-336)||(17706165-17706357)
chr8 (356-414)||(2072381-2072439)
chr8 (370-416)||(2250368-2250414)
chr8 (347-401)||(33067531-33067585)
chr8 (144-226)||(36900009-36900091)
chr8 (347-416)||(17081394-17081463)
chr8 (279-336)||(39886078-39886135)
chr8 (376-416)||(12544994-12545034)
chr8 (354-428)||(16723225-16723300)
chr8 (347-428)||(2258114-2258196)
chr8 (279-336)||(3158039-3158096)
chr8 (279-336)||(7274653-7274710)
chr8 (359-416)||(9024502-9024559)
chr8 (302-335)||(15279658-15279691)
chr8 (302-335)||(15460027-15460060)
chr8 (344-416)||(37427202-37427277)
chr8 (357-409)||(32646840-32646892)
chr8 (344-412)||(36355977-36356040)
[»] chr5 (32 HSPs)
chr5 (344-416)||(9276600-9276672)
chr5 (347-428)||(30501163-30501245)
chr5 (347-428)||(30541506-30541588)
chr5 (344-428)||(30104805-30104890)
chr5 (339-416)||(2918612-2918689)
chr5 (344-428)||(7719205-7719290)
chr5 (344-428)||(16667312-16667397)
chr5 (344-428)||(18229622-18229707)
chr5 (127-242)||(13373861-13373974)
chr5 (344-419)||(40530455-40530530)
chr5 (347-413)||(34899159-34899225)
chr5 (348-409)||(8208200-8208261)
chr5 (348-409)||(15720088-15720149)
chr5 (344-428)||(17692263-17692348)
chr5 (344-421)||(39558787-39558864)
chr5 (344-416)||(8221136-8221208)
chr5 (278-336)||(9672352-9672410)
chr5 (351-416)||(3140828-3140893)
chr5 (339-414)||(112501-112576)
chr5 (348-409)||(24041047-24041108)
chr5 (127-243)||(9671053-9671167)
chr5 (337-416)||(13480032-13480112)
chr5 (344-416)||(41048000-41048072)
chr5 (279-338)||(30332281-30332340)
chr5 (277-335)||(35929523-35929581)
chr5 (178-243)||(13375220-13375285)
chr5 (279-336)||(16308565-16308622)
chr5 (359-416)||(18963826-18963883)
chr5 (279-336)||(27756787-27756844)
chr5 (279-332)||(28592081-28592134)
chr5 (344-416)||(5815091-5815163)
chr5 (344-416)||(23117247-23117318)
[»] scaffold0036 (1 HSPs)
scaffold0036 (344-428)||(62545-62630)
[»] scaffold0517 (2 HSPs)
scaffold0517 (18-122)||(5602-5706)
scaffold0517 (18-128)||(6736-6847)
[»] scaffold0419 (1 HSPs)
scaffold0419 (344-414)||(1081-1151)
[»] scaffold0119 (1 HSPs)
scaffold0119 (338-419)||(1419-1500)
[»] scaffold0060 (1 HSPs)
scaffold0060 (178-336)||(13149-13310)
[»] scaffold0003 (1 HSPs)
scaffold0003 (337-416)||(103662-103741)
[»] scaffold0004 (1 HSPs)
scaffold0004 (339-416)||(335863-335940)
[»] scaffold1444 (2 HSPs)
scaffold1444 (348-406)||(1728-1786)
scaffold1444 (348-416)||(956-1024)
[»] scaffold0268 (1 HSPs)
scaffold0268 (348-406)||(20272-20330)
[»] scaffold0111 (1 HSPs)
scaffold0111 (369-406)||(38150-38187)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 41592944 - 41593268
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||    
T  41592944 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttactttttttaatttcatccctatgtcaattttcgtttttgg 41593043  T
Q  118 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctga 217  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41593044 ttttagtccctctcatgccaactcatcaacgtttgccaactcataacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctga 41593143  T
Q  218 cggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaagga 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||| |||| ||| |||||||||| |||    
T  41593144 cggcaaggacctttttcaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttacagggaccaaaaccaaaaatgcacgaacttacaggga 41593243  T
Q  318 ccatttacatatttaagccataaat 342  Q
    |||||||||||||||||||| ||||    
T  41593244 ccatttacatatttaagccaaaaat 41593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 41384467 - 41384149
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||    
T  41384467 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcagaatttgatgtttattttttttaaattcatccctatgtcaattttcgtttttgg 41384368  T
Q  118 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctga 217  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||  ||||| |||||||    
T  41384367 ttttagtccctctcatgccatttcatcaacgtttgccaacttagagcctgccacgtaggcctccgttagccaccaaaacatttttgatgacgaaagctga 41384268  T
Q  218 cggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaagga 317  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||||| |||       |||||||||||||||||||||| ||||||||||||||||||    
T  41384267 cggcaagaaccttttccaaaaggttatcaaaatacagggtttgttttaaaacaaaaaaacttacagggaccaaaacaaaaaatgcgcgaacttacaagga 41384168  T
Q  318 ccatttacatatttaagcc 336  Q
    |||||||||||||||||||    
T  41384167 ccatttacatatttaagcc 41384149  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 127 - 336
Target Start/End: Original strand, 41385659 - 41385868
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||  ||||||||||  ||| ||||||||  ||||||||||| ||| ||||||||||||||   | ||||| |||||||||||||||||||||||    
T  41385659 ctctcatgttatctcatcaattttt-ccaactcatgacctgccacgtgggc-tccgttagccaccatgacatttttgttgacggaagctgacggcaagga 41385756  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaac--nnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccattta 324  Q
    |||||| |||||||||||||||||| || |||||||||| |||         |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  41385757 ccttttccaaaaggttatcaaaatacagtgtttgttttaaaacaaaaaaaaacttacagggaccaaaacaaaaaatgcgcgaacttacagggaccattta 41385856  T
Q  325 catatttaagcc 336  Q
    ||||||||||||    
T  41385857 catatttaagcc 41385868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 135 - 336
Target Start/End: Complemental strand, 41591714 - 41591515
Alignment:
Q  135 ccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttc 234  Q
    ||||||||||||| ||||||||||||  | |||||||||  || ||||||||||| ||  |||||||| |||||||||||| ||| ||| |||||||| |    
T  41591714 ccatctcatcaac-tttgccaactcatgatctgccacgtgtgc-tccgttagccagcattgcgtttttgttgacggaagctaacgacaatgaccttttcc 41591617  T
Q  235 aaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaag 334  Q
    ||||||||||||||||| ||||||| |||||||||       ||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  41591616 aaaaggttatcaaaatacagggtttcttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcgaaattacagggaccttttacatatttaag 41591517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 44537427 - 44537342
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44537427 tttaatgaaaagttatgtattatatacaatggaaattataatagttgactttttaaaagaataattactaaatatgggatgcttaa 44537342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 43234882 - 43234791
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||| |||||||||||||||||||||||||| | |||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||    
T  43234882 taaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagtttattttttaaaagaataattactaaatataggatgcttaa 43234791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 28770563 - 28770493
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  28770563 tttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgacttttcaaaagaataattactaa 28770493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 7653662 - 7653590
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  7653662 tttaatgaaaagttgtgtaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 7653590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 21727441 - 21727498
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  21727441 tgtattgaatgtattggaaattgtaatagttgactttttaaaagaataattactaaat 21727498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 27123360 - 27123275
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||| |||||||| |||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||    
T  27123360 tttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttgactttttaaaagaatgattactaaatttgggatgcttaa 27123275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 28663159 - 28663224
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28663159 tttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagttgactttttaaaagaataatt 28663224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 3692959 - 3692891
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| || |||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  3692959 atgaaaaattgtgtattgagtgcattggaaattgtaatagttgattttttaaaagaataattgctaaat 3692891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 144 - 336
Target Start/End: Complemental strand, 706935 - 706743
Alignment:
Q  144 caacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggtta 243  Q
    |||| ||||||||||||||| |||||||||  | |||||||| ||| ||| || ||||| ||||||||| ||||||||| |||   ||| |||||||||     
T  706935 caacttttgccaactcagaaactgccacgtgtgtctccgttacccagcaatgcttttttgttgacggaacctgacggcagggatgatttccaaaaggttt 706836  T
Q  244 tcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
      ||| || | || ||||||||||||       ||||||||||| ||||| ||||   ||| || ||||| ||||| ||||||||||||||||    
T  706835 cgaaattacaagggttgttttagaacaaaaaaacttacagggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcc 706743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 37158369 - 37158448
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||| || |||| ||||||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  37158369 ataaattttttataaaaaattatgtattcactgcattgaaaattgtaatagttgactttttaaaataataattactaaat 37158448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 39321009 - 39321067
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  39321009 aaaagttgtgtattgaatacattgaaaattgtaatagttgactttttaaaagaataatt 39321067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 35496593 - 35496678
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa-tatggatgcttaa 428  Q
    ||||||||||| || |||| ||||||||||| ||||| ||||||||||||||||||||  ||| |||||||| | |||||||||||    
T  35496593 tttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatagttgactttttaaaaatatagttactaaattttggatgcttaa 35496678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 42936092 - 42936024
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattacta 413  Q
    ||||||||||| || |||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  42936092 tttaatgaaaaattgtgtattaaatgcattg-aaattgtaatagttgattttttaaaagaataattacta 42936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 44592945 - 44592880
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||    
T  44592945 aaaagttgtgtattgaatacattgaaaattgtaatagttaactttttaaaagaataattattaaat 44592880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 43224107 - 43224171
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataat 408  Q
    |||||||||||||| ||||||  || ||||||||||| ||| |||||||||||||||||||||||    
T  43224107 tttaatgaaaagttgtgtattacatacattggaaattgtaacagttgactttttaaaagaataat 43224171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 336
Target Start/End: Original strand, 708019 - 708211
Alignment:
Q  144 caacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggtta 243  Q
    |||| ||||||||| ||||| |||||||||   ||||||||| ||||||| || ||||| || |||||| ||||||||| ||||  ||| |||||||||     
T  708019 caacttttgccaacccagaaactgccacgtgtacctccgttatccaccaatgcttttttgttaacggaacctgacggcagggacgatttccaaaaggttt 708118  T
Q  244 tcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
      ||| || | || ||||||||||||       |||||| |||| ||||| ||||   ||| || ||||| ||||| ||||||||||||||||    
T  708119 cgaaattacaagggttgttttagaacaaaaaaacttacatggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcc 708211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 35731366 - 35731311
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    ||||||| |||||| | ||||||||||||| |||||||||||||||||||||||||    
T  35731366 aaaagttgtgtattaagtgcattggaaattgtaatagttgactttttaaaagaata 35731311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 27870509 - 27870429
Alignment:
Q  342 tatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatggatgcttaa 428  Q
    ||||||||||||| |||| ||||||||| |     |||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27870509 tatttaatgaaaaattatttattgaatgaa-----aattgtaatagttgactttt-aaaagaataattactaaatatggatgtttaa 27870429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 25886252 - 25886184
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||| |||||| |||| |||| ||||| |||||||||||||| ||| ||||||||| ||||||    
T  25886252 atgaaaagttgtgtattaaatgtattgaaaattgtaatagttgactttctaagagaataatttctaaat 25886184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 35923540 - 35923595
Alignment:
Q  361 tattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||||||||| |||||||| | |||| ||||||||||| |||||||    
T  35923540 tattgaatgcattggaaattgtaatagtttatttttaaaaagaataatgactaaat 35923595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 10200647 - 10200593
Alignment:
Q  352 aaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    ||||||||||||| |||||||| |||||| |||  ||||||||||||||||||||    
T  10200647 aaagttatgtatttaatgcatttgaaattgtaacggttgactttttaaaagaata 10200593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 33823954 - 33823872
Alignment:
Q  144 caacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||| ||||||||||||||| |||||||||  | ||||||||  |||||| || ||||| |||| |||| |||||||||||||    
T  33823954 caacttttgccaactcagaaactgccacgtgtgtctccgttacacaccaatgcttttttgttgatggaacctgacggcaagga 33823872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 29711520 - 29711585
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||| ||||||| ||||| ||||| |||||||||| ||||| |||||||||||| |||| ||||||    
T  29711520 aaaaattatgtaatgaatacattgaaaattataattgttgattttttaaaagaaaaatttctaaat 29711585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 18801122 - 18801054
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||| |||||| | || |||| ||||| ||||||||||||||| |||||| ||||| ||||||    
T  18801122 atgaaaagttgtgtattcattgtattgaaaattgtaatagttgacttttgaaaagagtaattgctaaat 18801054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 26239561 - 26239633
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| || | |||| ||||||||||||| |||||  ||| ||||||| ||||||||||| ||||||    
T  26239561 tttaatgaaaaattgtatattcaatgcattggaaactataaacgttaactttttgaaagaataattgctaaat 26239633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 27160364 - 27160305
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| ||||| |||||  | |||||||||||||||| ||||| ||||||||||    
T  27160364 cttacagggacgaaaaccaaaatctcacgaacttacaaggaccttttacttatttaagcc 27160305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 27161995 - 27162054
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||| |||| ||||| |||||  |||||||||||| ||||| ||||||||||||||||    
T  27161995 cttacaaggacgaaaaccaaaatctcgcgaacttacagggaccttttacatatttaagcc 27162054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 46246530 - 46246634
Alignment:
Q  232 ttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatattt 331  Q
    ||||||| ||||||||  || |||||||||||||||||         ||||||||| ||||| ||||   |||||||||||| ||||| |||||||||||    
T  46246530 ttcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatattt 46246629  T
Q  332 aagcc 336  Q
    |||||    
T  46246630 aagcc 46246634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 14651410 - 14651459
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgact 393  Q
    |||||||||||||| |||| ||| ||||||||||||| ||| ||||||||    
T  14651410 tttaatgaaaagttgtgtaatgattgcattggaaattgtaacagttgact 14651459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 27337779 - 27337718
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||||| |||||| |||| |||| ||| | |||||||||| ||||| |||||||||||    
T  27337779 atgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttttaaagaataatt 27337718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 32051354 - 32051424
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| ||||  |||||||||  || ||||| | ||||||||||||| |||| ||||||||||||||    
T  32051354 tttaatgaaaaattat--attgaatgctatgaaaattgtcatagttgacttttcaaaaaaataattactaaat 32051424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 40753967 - 40754038
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||| |||||| |||| ||| |||| | |||||||||| ||||| ||| |||||||| |||||    
T  40753967 tttaatgaaaagttgtgtattaaatgtatt-gaaaatgtaatagttgatttttttaaaaaataattattaaat 40754038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 45277969 - 45278033
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaata 343  Q
    ||||||||| ||||| ||||   ||| || ||||| |||| ||||||||||||||||||||||||    
T  45277969 tacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccataaata 45278033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 47778600 - 47778636
Alignment:
Q  370 cattggaaattataatagttgactttttaaaagaata 406  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  47778600 cattggaaattgtaatagttgactttttaaaataata 47778636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 43517818 - 43518143
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  43517818 agaatagtgagagggagaagatggaaagtttaatttttaaaattcaaaatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttgg 43517917  T
Q  118 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43517918 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctcagttagccaccaaagcgtttttattgacggaagctga 43518017  T
Q  218 cggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaagga 317  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||| |||| ||| |||||||||| |||    
T  43518018 cggcaatgacctttttcaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttacagggaccaaaaccaaaaatgcacgaacttacaggga 43518117  T
Q  318 ccatttacatatttaagccataaata 343  Q
     |||||| ||||||||||| ||||||    
T  43518118 tcatttaaatatttaagccttaaata 43518143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 40127553 - 40127242
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  40127553 agaatagtgagaggaagaagatggaaagtttgatttttaaaatttaaaatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttgg 40127454  T
Q  118 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctga 217  Q
    |||||||||||||||||||| |||||      ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  40127453 ttttagtccctctcatgccaactcatg-----ttgccaactcataacctgccatgtaggcctccgttagccaccaaagcgtttttattgacggaagttga 40127359  T
Q  218 cggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaagga 317  Q
    ||| |||||||||||||||||| ||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||    
T  40127358 cggtaaggacctttttcaaaagattatcaaaatacagggtttgttttagaacaaaaaaacttacagggaccaaaacaaaaattgcgcgaacttacaggga 40127259  T
Q  318 ccatttacatatttaag 334  Q
    |||||||||||||||||    
T  40127258 ccatttacatatttaag 40127242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 42828748 - 42828987
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnn-aaattcatccctatgtcaattttcgtttttg 116  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||  ||||||||||||||    
T  42828748 agaatagtgagtggaagaagatggaaaatttgatttttaaaattcaaaatttgatgtttacatttttttaaattcatccctatg--aattttcgtttttg 42828845  T
Q  117 gttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctg 216  Q
     |||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||          
T  42828846 attttagtccctctcataccatttcatcaacgtttgccaacttaaaacctgccacgtaggcctccgttagccaccaaaacgtttttgttgacgg------ 42828939  T
Q  217 acggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaac 269  Q
        ||  ||||||||||||||||||||||||||| | ||||| |||||||||    
T  42828940 ----catagacctttttcaaaaggttatcaaaataca-ggtttattttagaac 42828987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 135 - 336
Target Start/End: Complemental strand, 43516597 - 43516398
Alignment:
Q  135 ccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttc 234  Q
    ||||||||||||| ||||||||||||  |||||||||||  || ||||||||||| ||  |||||||| ||||||||||||||||| ||| ||||||| |    
T  43516597 ccatctcatcaac-tttgccaactcatgacctgccacgtgtgc-tccgttagccagcattgcgtttttgttgacggaagctgacggtaagaaccttttcc 43516500  T
Q  235 aaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaag 334  Q
    ||||||||||||||||| ||||||| |||||||||       ||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  43516499 aaaaggttatcaaaatacagggtttcttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcgaaattacagggaccttttacatatttaag 43516400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 337
Target Start/End: Original strand, 40128787 - 40128987
Alignment:
Q  135 ccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttc 234  Q
    ||||||||||||| ||||||||||||  |||||||||||  || ||||||||||| ||  |||||||  |||||||||||| |||||||||||||||| |    
T  40128787 ccatctcatcaac-tttgccaactcatgacctgccacgtgtgc-tccgttagccagcattgcgttttcgttgacggaagctaacggcaaggaccttttcc 40128884  T
Q  235 aaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaag 334  Q
    ||||||||||||||||| ||||||| |||||||||       ||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||| ||||    
T  40128885 aaaaggttatcaaaatacagggtttcttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcgaaattacagggaccttttacatatgtaag 40128984  T
Q  335 cca 337  Q
    |||    
T  40128985 cca 40128987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 10344999 - 10345203
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||| ||||||||||||| ||||||||||||  | |||||||||  || ||||||||||||||   | ||||| |||||||||||||||||||||||    
T  10344999 ctctcattccatctcatcaac-tttgccaactcatgagctgccacgtgtgc-tccgttagccaccatgacatttttgttgacggaagctgacggcaagga 10345096  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |||||| ||||||||||  |||||| |||||||||||||||||       ||||||||||| |||||||||| ||||| || ||||| ||| ||||||||    
T  10345097 ccttttccaaaaggttagtaaaatacagggtttgttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcaaaattacagggatcatttaca 10345196  T
Q  327 tatttaa 333  Q
    |||||||    
T  10345197 tatttaa 10345203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 127 - 344
Target Start/End: Complemental strand, 42827524 - 42827309
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacgg-caagg 225  Q
    ||||||| ||||||||||||  ||| ||||||||  |||||||||||  || || ||||||||||| ||||||||| |||||||||||||| || ||||     
T  42827524 ctctcataccatctcatcaattttt-ccaactcatgacctgccacgtgtgc-tctgttagccaccatagcgtttttgttgacggaagctgatgggcaagt 42827427  T
Q  226 acctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttac 325  Q
    ||||||| |||||||||||||||||| | |||||||||||||||       ||| ||||||||||| |||||| |||||||||||||||| ||| |||||    
T  42827426 accttttccaaaaggttatcaaaatagatggtttgttttagaacaaaaaaacttgcagggaccaaaccaaaaa-tgcgcgaacttacaagaaccgtttac 42827328  T
Q  326 atatttaagccataaatat 344  Q
    ||||||||| ||| |||||    
T  42827327 atatttaagtcattaatat 42827309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 22054492 - 22054324
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnc 277  Q
    ||||||||||||| |  |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||||||        |    
T  22054492 ctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaaaaaaaaatc 22054393  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaatattt 346  Q
    |||||||||| ||||| |||| |||||||||||||| ||||| |||||||||||||||| |||| ||||    
T  22054392 ttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagccttaaagattt 22054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 44819927 - 44819769
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnc 277  Q
    |||||||||||||||  |||||||| ||||| ||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||            
T  44819927 ctccgttagccaccatggcgtttttgttgactgaagctgacggcaaggaccttttccaaaaggttagcaaagtagagggtttgttttagaacaaaaaaat 44819828  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||||||| ||||  |||| |||| ||| ||| | ||||||||||||||||||||||    
T  44819827 ttacagggacaaaaatcaaaaatgcgtgaaattatagggaccatttacatatttaagcc 44819769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 181 - 337
Target Start/End: Original strand, 22060064 - 22060220
Alignment:
Q  181 cgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnctta 280  Q
    |||||||||| |  |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||||||        ||||    
T  22060064 cgttagccacaattgcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaaaaaaaaatctta 22060163  T
Q  281 cagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcca 337  Q
    ||||||| ||||| |||| |||||||||||||| ||||| |||||||||||||||||    
T  22060164 cagggacgaaaaccaaaaatgcgcgaacttacatggaccttttacatatttaagcca 22060220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 19890209 - 19890294
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19890209 tttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattactaaatttaggatgcttaa 19890294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 9448974 - 9449045
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  9448974 tttaatgaaaagttgtgtattgaatgtattgaaaattataatagttga-tttttaaaagaataattactaaat 9449045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 4762441 - 4762350
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||| |||||| |||| || |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| | ||||||||||    
T  4762441 taaatttttaataaaaaattgtgtattgaatgcattgaaaattataatagttgactttataaaataataattactaaatttgggatgcttaa 4762350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 31017328 - 31017400
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||| |||||| ||||||||| |||||| |||| |||||||||| ||||||||||||||||||    
T  31017328 tttaatgaaaagttgtgtattaaatgcattgaaaattaaaatatttgacttttttaaagaataattactaaat 31017400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 31452373 - 31452437
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa 415  Q
    ||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  31452373 aaaagttgtgtattgaatgcattgaaaattgtaattgttgactttttaaaagaataattactaaa 31452437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 334
Target Start/End: Complemental strand, 42929140 - 42928937
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | ||||||||||  || |||||| |  || ||||||||||| ||  |||||||| ||||| ||||||||| |||||||    
T  42929140 ctctcatgccatctcatcaaa-tgtgccaactcatgacttgccacctttgc-tccgttagccatcatggcgttttttttgacagaagctgacagcaagga 42929043  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |  ||||||||||||||  || ||| ||||||| ||||||||        |||||| | || ||||| |||| ||||||||||||||  |||| ||||||    
T  42929042 ctattttcaaaaggttaagaagatacagggtttattttagaa--aaaaaacttacatgaacgaaaaccaaaaatgcgcgaacttacagagaccttttaca 42928945  T
Q  327 tatttaag 334  Q
    ||||||||    
T  42928944 tatttaag 42928937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 1334904 - 1334989
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| || | |||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||| | ||||||||||    
T  1334904 tttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgatttttttaaagaataattattaaatttgggatgcttaa 1334989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 15505627 - 15505558
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| ||||||| |||||||||||| |||||    
T  15505627 aatgaaaagttgtgtattgaatgtattgaaaattataatagtttactttttgaaagaataattattaaat 15505558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 29239263 - 29239336
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattact 412  Q
    ||||| ||||||||||| |  |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  29239263 taaatctttaatgaaaaatggtgtattgaatgcattgaaaattgtaatagttgactttttaaaa-aataattact 29239336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 34904809 - 34904883
Alignment:
Q  345 ttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg 419  Q
    |||||||||| || |||||| ||| ||||  ||||| |||||||||| |||||||||||||||||||||||||||    
T  34904809 ttaatgaaaaattttgtattaaattcattaaaaattgtaatagttgattttttaaaagaataattactaaatatg 34904883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 14295707 - 14295642
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| |||||| ||||||||| ||||| |||||||| || |||||||||||||||||||||||    
T  14295707 aaaagttgtgtattcaatgcattgaaaattgtaatagttaaccttttaaaagaataattactaaat 14295642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 20064993 - 20064928
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattacta 413  Q
    ||||||| || |||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  20064993 atgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattacta 20064928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 336
Target Start/End: Original strand, 44820829 - 44820989
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn- 276  Q
    |||||||||| || |  |||||||| || |||||| || ||||||| |||| ||||||||||||||  || ||| | ||||| ||||||||             
T  44820829 ctccgttagctacaatggcgtttttgttaacggaaactaacggcaatgaccattttcaaaaggttaagaagatacaaggtttattttagaaaaaaaaaaa 44820928  T
Q  277 -cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
     ||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||||||||||    
T  44820929 acttacagggacgaaaacaaaaaatgcgcgaatttacagggaccttttacatatttaagcc 44820989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 38533895 - 38533973
Alignment:
Q  350 gaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg-gatgcttaa 428  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||| || |||||||||    
T  38533895 gaaaaattgtgtattgaatgcattagaaattacaatagttgactatttaaaa-aataattactaaatttgagatgcttaa 38533973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 10344045 - 10343987
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcca 337  Q
    ||||||||| |||||||||| ||| |||||||||| ||||| |||||||||||||||||    
T  10344045 tacagggacgaaaacaaaaaatgcacgaacttacatggaccttttacatatttaagcca 10343987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 336
Target Start/End: Original strand, 18224717 - 18224904
Alignment:
Q  149 tttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaa 248  Q
    ||||||||||||||| |||||||||  | |||||||| ||| ||| || ||||| ||||||||| ||||| ||| |||   ||| ||||||||| | |||    
T  18224717 tttgccaactcagaaactgccacgtgtgtctccgttatccatcaatgcttttttgttgacggaacctgacagcagggatgatttccaaaaggttttgaaa 18224816  T
Q  249 atatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
     || | || ||||||||||||       ||||||||||| ||||| ||||   | | || ||||| ||||| ||||||||||||||||    
T  18224817 ttacatgggttgttttagaacaaaaaaacttacagggactaaaaccaaaaacacactaaattacagggaccttttacatatttaagcc 18224904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 31559291 - 31559386
Alignment:
Q  31 gaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggttttagtcc 126  Q
    ||||||| ||||||  |||||||||||| ||||||||| |||| ||||       || ||||||||||||| ||| ||||||||||||||||||||    
T  31559291 gaagaaggtggaaatattgatttttaaatttcaaaattcgatgattacgtgttttaatttcatccctatgtaaatattcgtttttggttttagtcc 31559386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 41933223 - 41933145
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||| ||| || ||||||| | || ||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  41933223 taaattttttataaaaagttgtttactgagtgcattgaaaattgtaatagttgactttttaaaagaataattgctaaat 41933145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 1298977 - 1299048
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatta 410  Q
    ||||| ||||||||||||||||||||| ||| || || ||||| | |||||||||||||||||| ||||||||    
T  1298977 taaatttttaatgaaaagttatgtattaaatacagtgaaaattgtgatagttgactttttaaaa-aataatta 1299048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 28563955 - 28564019
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaa 341  Q
    ||||||||||| ||||| |||||  |||||||||||||||||| ||||| |||| ||||||||||    
T  28563955 cttacagggacgaaaaccaaaatctcgcgaacttacaaggaccttttacttattaaagccataaa 28564019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 11944897 - 11944964
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa 415  Q
    |||||||||| |||||| ||||||||| ||||| ||||||||||| ||||  || |||||||||||||    
T  11944897 atgaaaagttgtgtattcaatgcattgaaaattgtaatagttgacattttttaaaaataattactaaa 11944964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 40304717 - 40304829
Alignment:
Q  232 ttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatattt 331  Q
    ||||||| ||||||||  || |||||||||||||||||         ||||||||| ||||| ||||   |||||||||||| ||||| |||||||||||    
T  40304717 ttcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatattt 40304816  T
Q  332 aagccataaatat 344  Q
    |||||| ||||||    
T  40304817 aagccaaaaatat 40304829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 13538478 - 13538417
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||||||||| |||||||||||||||  | || |||| ||||| |||||||||||    
T  13538478 atgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataatt 13538417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 19514953 - 19514892
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||||| | |||| | |||||||  |||||||||||||||||||| ||||||||||||    
T  19514953 atgaaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataatt 19514892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 42931681 - 42931741
Alignment:
Q  183 ttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggtta 243  Q
    ||||||||||  |||||||| ||||| |||||||||| |||||||  ||||||||||||||    
T  42931681 ttagccaccatggcgtttttgttgacagaagctgacgacaaggactattttcaaaaggtta 42931741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 38533372 - 38533423
Alignment:
Q  350 gaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaa 401  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| |||||||    
T  38533372 gaaaaattgtgtattgaatgcattagaaattacaatagttgactatttaaaa 38533423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 43617513 - 43617572
Alignment:
Q  350 gaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||  |||||| ||||| ||||||||||||||| |||| ||||| |||||||||||    
T  43617513 gaaaagtcgtgtatttaatgctttggaaattataataattgattttttgaaagaataatt 43617572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 6844122 - 6844156
Alignment:
Q  302 cgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||||||||||||||| ||||||||||||||||    
T  6844122 cgcgaacttacaaggaccttttacatatttaagcc 6844156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 16142260 - 16142222
Alignment:
Q  302 cgcgaacttacaaggaccatttacatatttaagccataa 340  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  16142260 cgcgaacttacaaggacgatttacatattttagccataa 16142222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 22053182 - 22053128
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaa 333  Q
    ||||||||| ||||||||||   ||||||||||||| |||| |||||||||||||    
T  22053182 tacagggacgaaaacaaaaaacacgcgaacttacaaagaccttttacatatttaa 22053128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 7673273 - 7673208
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| |||| | |||| |||| ||||| ||||||||||||||| || ||||||||| ||||||    
T  7673273 aaaagttgtgtactaaatgtattgaaaattgtaatagttgacttttaaagagaataattgctaaat 7673208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 28165715 - 28165658
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||| ||||  |||| |||||||| ||||| ||||||||||||||||    
T  28165715 tacagggactaaaaccaaaaacgcgctaacttacatggaccttttacatatttaagcc 28165658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 8964474 - 8964410
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattact 412  Q
    ||||||| || |||| | |||||||||||||||  |||| || ||||||| ||||||||||||||    
T  8964474 atgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattact 8964410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 34591782 - 34591714
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaatattta 347  Q
    |||| |||| |||||||||| | | | |||||||| |||| |||||||||||||||||  |||||||||    
T  34591782 tacaaggacgaaaacaaaaaatacacaaacttacatggacgatttacatatttaagcctaaaatattta 34591714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 44904584 - 44904532
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatattt 331  Q
    ||||||||| ||||| |||| ||||| ||||||||| |||| |||||||||||    
T  44904584 tacagggactaaaaccaaaaatgcgctaacttacaaagaccttttacatattt 44904532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 31200687 - 31201002
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||| ||||||||    
T  31200687 agaatagtgagagcaagaagatcgaaagtttgatttttaaaattcaaaatttgatgtttacttttttaaaattcatgcctatgtcaatttttgtttttgg 31200786  T
Q  118 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||    
T  31200787 ttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtagacctccgttagccaccagagtgtttttgttgacggaagctga 31200886  T
Q  218 cggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaac-nnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaagg 316  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||        |||||||||| ||||||||||| ||||||||||||||  |    
T  31200887 cggcaaggacctttttcaaaaggttat-aaaatacagggtttgttttagaacaaaaaaaacttacagggatcaaaacaaaaaatgcgcgaacttacagag 31200985  T
Q  317 accatttacatatttaa 333  Q
    |||||||||||||||||    
T  31200986 accatttacatatttaa 31201002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 334
Target Start/End: Original strand, 24613464 - 24613669
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | |||||||||| ||| |||||| |  || ||||||||||||    |||||||| ||||| |||||| ||||||||||    
T  24613464 ctctcatgccatctcatcaaa-tgtgccaactcataacttgccacttgtgc-tccgttagccacagtggcgtttttgttgacagaagctaacggcaagga 24613561  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    || ||||||||||||||  || ||||||||||| ||||||||        ||||||||||| |||||||||| |||||||||||||| ||||| ||||||    
T  24613562 ccattttcaaaaggttaagaagatatagggtttattttagaaaaaaaaaacttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttaca 24613661  T
Q  327 tatttaag 334  Q
    ||||||||    
T  24613662 tatttaag 24613669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 135 - 337
Target Start/End: Complemental strand, 31199447 - 31199248
Alignment:
Q  135 ccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttc 234  Q
    ||||||||||||| ||||||||||||  | |||||||||  || ||||||||||| ||  |||||||| ||||||||| |||||||||||||||||| ||    
T  31199447 ccatctcatcaac-tttgccaactcatgatctgccacgtgtgc-tccgttagccagcatggcgtttttgttgacggaatctgacggcaaggacctttatc 31199350  T
Q  235 aaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaag 334  Q
    |||||| |||||||||| | |||||||||||| ||       ||||||||||| |||||  ||| | |||||| ||||| ||||| |||||||||| |||    
T  31199349 aaaagg-tatcaaaatacaaggtttgttttaggacaaaaaaacttacagggacgaaaacctaaaatacgcgaaattacagggaccttttacatattcaag 31199251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 269
Target Start/End: Original strand, 27320425 - 27320689
Alignment:
Q  27 agaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggttttagtcc 126  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| |||       |  ||||||||||||| |||||||||||||| |||||||||    
T  27320425 agaggaagaagatggaaagtttggtttttaaaattcaaaatttaatgtctacgttttttattttcatccctatgtaaattttcgtttttgattttagtcc 27320524  T
Q  127 ct----------------------ctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttat 204  Q
    ||                      ||||||||| |||| |||| |||||||||||||||||||||||    ||||| |||| |||| ||||| ||||| |    
T  27320525 ctgtattaacactacttatgatctctcatgccacctcaacaacttttgccaactcagaacctgccacacgtgcctctgttacccacaaaagcatttttgt 27320624  T
Q  205 tgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaac 269  Q
    |||||||| ||||||||||||||  ||| ||||||||||   ||||| | || ||||||||||||    
T  27320625 tgacggaacctgacggcaaggacgatttccaaaaggttacgtaaatacaagggttgttttagaac 27320689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 27362305 - 27362447
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||| |||| |||| |||||||||||||||||||| ||    ||||| |||| |||| ||||| ||||| ||||||||| ||||||||||| |    
T  27362305 ctctcatgccacctcagcaacttttgccaactcagaacctgcaacacgtgcctctgttacccacaaaagcatttttgttgacggaatctgacggcaagta 27362404  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaac 269  Q
    |  ||||||||||||||  |||||| | || ||||||||||||    
T  27362405 caattttcaaaaggttacgaaaatacaagggttgttttagaac 27362447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 44460200 - 44460301
Alignment:
Q  136 catctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttca 235  Q
    ||||||| |||| |||||||||||| ||| |||||| ||||||||||||| |||| ||||||||||| ||||||||| |||||| |||||||  ||||||    
T  44460200 catctcaacaacttttgccaactcaaaacgtgccacctaggcctccgttacccactaaagcgtttttgttgacggaacctgacgacaaggacgattttca 44460299  T
Q  236 aa 237  Q
    ||    
T  44460300 aa 44460301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 22730509 - 22730580
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat 418  Q
    |||||||| || |||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  22730509 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaataattactagatat 22730580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 335
Target Start/End: Complemental strand, 24612434 - 24612279
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnct 278  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| ||||||  ||||||||        ||    
T  24612434 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaa-aaaaaaact 24612336  T
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagc 335  Q
    | ||| ||| ||||| |||| |||||||||||||| ||||| |||||||||||||||    
T  24612335 tgcagagacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagc 24612279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 27361494 - 27361399
Alignment:
Q  27 agaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggtttta 122  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||        || ||||||||||||| |||||  |||||||||||||    
T  27361494 agaggaagaagatggaaaatttgatttttaaaattcaaaatttgatatttaggttttttaatttcatccctatgtaaatttgtgtttttggtttta 27361399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 33781345 - 33781550
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | ||||||||||  || |||||| |  || |||||||||||| |  |||||||| ||||| |||||| ||||||||||    
T  33781345 ctctcatgccatctcatcaaa-tgtgccaactcatgacttgccacatgtgc-tccgttagccacaatggcgtttttgttgacagaagctaacggcaagga 33781442  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttag-aacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttac 325  Q
    || ||||||||||||||  || ||| | ||||| |||||| ||         ||||| |||| ||||||||||  ||||||||||||| ||||| |||||    
T  33781443 ccattttcaaaaggttaagaagatacaaggtttattttagaaagaaaaaaaattacaaggacgaaaacaaaaaacgcgcgaacttacagggaccttttac 33781542  T
Q  326 atatttaa 333  Q
    ||||||||    
T  33781543 atatttaa 33781550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 42846025 - 42846111
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgca-ttggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||| ||||||||||||| ||| |||||  ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  42846025 tttaatgaaaagttgtgtattgaatgcaattgaaaattgaaatagttgactttttcaaagaataattactaaatttaggatgcttaa 42846111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 24791582 - 24791526
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaa 400  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  24791582 tttaatgaaaagttatgtattgaatacattgaaaattgtaatagttgactttttaaa 24791526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 29083920 - 29083990
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    |||| ||||||||| |||||| ||||||||  ||||| |||||||| ||||||||||||||||||||||||    
T  29083920 tttattgaaaagttgtgtattaaatgcattaaaaattgtaatagttaactttttaaaagaataattactaa 29083990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 12086783 - 12086855
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||  | ||||||||||||| || |||||||||||| || ||||| |||||||||||||||||||    
T  12086783 tttaatgaaaaaatgtgtattgaatgcactgaaaattataatagatgtcttttaaaaagaataattactaaat 12086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 16663056 - 16662992
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa 415  Q
    ||||||| |||||| | |||||||| |||| |||||||||||||||||||| |||||||||||||    
T  16663056 aaaagttgtgtattcactgcattggtaattgtaatagttgactttttaaaataataattactaaa 16662992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 51351363 - 51351291
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| || |||||| |||| |||||||||||||||| |  |||||||||||||||||||| |||||    
T  51351363 tttaatgaaaaattgtgtattaaatgtattggaaattataatactaaactttttaaaagaataattattaaat 51351291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 26143153 - 26143090
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatta 410  Q
    |||||||| || |||||| ||||||||  ||||| |||||||||||||||||||||||||||||    
T  26143153 aatgaaaaattgtgtattaaatgcattcaaaattgtaatagttgactttttaaaagaataatta 26143090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 48180213 - 48180256
Alignment:
Q  366 aatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  48180213 aatgcattggaaattgtaatagttgactttttaaaagaataatt 48180256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 26900047 - 26900109
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgac-tttttaaaagaataatt 409  Q
    ||||||||||||||| | ||||||||| ||||| ||||||||||| |||||||||||||||||    
T  26900047 atgaaaagttatgtaataaatgcattgaaaattgtaatagttgacttttttaaaagaataatt 26900109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 27319760 - 27319714
Alignment:
Q  31 gaagaagatggaaagtttgatttttaaaattcaaaatttgatgttta 77  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  27319760 gaagaagatggaaaatttgatttttaaaattcaaaatttgatattta 27319714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 52638193 - 52638250
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| | ||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  52638193 tgtattcactgcattggaaattgtaatagttggctttttaaaataataattactaaat 52638250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 49362374 - 49362446
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||| || | |||| ||| ||||||||||| |||||||| |||||||||||||||||||| |||||    
T  49362374 tttaataaaaaattgtatattaaatacattggaaattgtaatagttaactttttaaaagaataattattaaat 49362446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 27362190 - 27362237
Alignment:
Q  27 agaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgt 74  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  27362190 agaggaagaagatggaacgtttggtttttaaaattcaaaatttaatgt 27362237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 32558977 - 32558919
Alignment:
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||||||| ||||||||||   |||||||||||| ||||| ||||||||||||||||    
T  32558977 ttacagggacgaaaacaaaaaacacgcgaacttacagggaccttttacatatttaagcc 32558919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 5377866 - 5377805
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccat 338  Q
    ||||||||||| |||||||||| ||||| || ||||| ||||| ||||| ||||||||||||    
T  5377866 cttacagggactaaaacaaaaaatgcgccaatttacagggaccttttacttatttaagccat 5377805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 34594497 - 34594456
Alignment:
Q  89 ttcatccctatgtcaattttcgtttttggttttagtccctct 130  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  34594497 ttcatccctatgtaaatttccgtttttggttttagtccctct 34594456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 40673520 - 40673456
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataat 408  Q
    ||||| |||||||  ||||||||||  ||| |||||| |||||||||| ||||||||||||||||    
T  40673520 tttaaagaaaagtagtgtattgaatatattagaaattgtaatagttgaatttttaaaagaataat 40673456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 32615647 - 32615702
Alignment:
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaa 333  Q
    |||||||||| ||||||||||   |||||||||||| ||||| |||||||||||||    
T  32615647 ttacagggacaaaaacaaaaaacacgcgaacttacagggaccttttacatatttaa 32615702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 33780716 - 33780657
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| |||||||||| | |||||||||||| ||||  ||||||| ||||||||    
T  33780716 cttacagggacgaaaacaaaaaatacgcgaacttacagggacattttacatttttaagcc 33780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 35177858 - 35177909
Alignment:
Q  366 aatgcattggaaattataatagttgactttttaaaagaataattactaaata 417  Q
    ||||||||| | ||||||||| || |||||||||||||||||||| ||||||    
T  35177858 aatgcattgaatattataatatttaactttttaaaagaataattattaaata 35177909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 41081906 - 41081802
Alignment:
Q  232 ttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatattt 331  Q
    ||||||| ||||||||  || |||||||||||||||||         ||||||||| ||||| ||||   |||||||||||| ||||| |||||||||||    
T  41081906 ttcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatattt 41081807  T
Q  332 aagcc 336  Q
    |||||    
T  41081806 aagcc 41081802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 42939915 - 42939856
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    |||||||| || |||||| ||| ||||| |||||  ||||||||||||||||||||||||    
T  42939915 aatgaaaaattgtgtattaaattcattgaaaattgcaatagttgactttttaaaagaata 42939856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 45988267 - 45988310
Alignment:
Q  366 aatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||| |||||| |||||||||| |||||||||||||||||    
T  45988267 aatgcattagaaattgtaatagttgattttttaaaagaataatt 45988310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 55196631 - 55196572
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccat 338  Q
    |||| |||| ||||| |||| |||||||||||||||||||| ||| | ||||||||||||    
T  55196631 tacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttcttatttaagccat 55196572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 1677215 - 1677178
Alignment:
Q  93 tccctatgtcaattttcgtttttggttttagtccctct 130  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  1677215 tccctatgtaaatttgcgtttttggttttagtccctct 1677178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 13645085 - 13645048
Alignment:
Q  93 tccctatgtcaattttcgtttttggttttagtccctct 130  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  13645085 tccctatgtaaatttgcgtttttggttttagtccctct 13645048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 39551880 - 39551960
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgg-atgcttaa 428  Q
    |||||||||| | |||||| || |||| ||||| || ||||||| ||||||||||||||||| |||||| ||| ||||||||    
T  39551880 atgaaaagttgtttattgagtgtattgaaaattgta-tagttgattttttaaaagaataattgctaaatttggtatgcttaa 39551960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 52249405 - 52249340
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| | ||||||||  ||| || ||| |||||||| |||||||||||||||||||| |||||    
T  52249405 aaaagttgtatattgaatatattagagattgtaatagttaactttttaaaagaataattattaaat 52249340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 31199579 - 31199530
Alignment:
Q  25 tgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgttt 76  Q
    ||||||||||||||  |||||||||||||||  |||||||| ||||||||||    
T  31199579 tgagaggaagaagactgaaagtttgattttt--aattcaaattttgatgttt 31199530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 31796859 - 31796903
Alignment:
Q  302 cgcgaacttacaaggaccatttacatatttaagccataaatattt 346  Q
    |||||||||||| ||||| ||||||||||||||||| ||| ||||    
T  31796859 cgcgaacttacagggaccttttacatatttaagccaaaaaaattt 31796903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 32613941 - 32613881
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaactt-acaaggaccatttacatatttaagccat 338  Q
    ||||||||| ||||| ||||   ||||||||| ||||||||| ||||||||||||||||||    
T  32613941 tacagggacgaaaaccaaaaacacgcgaactttacaaggaccttttacatatttaagccat 32613881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 47638977 - 47638917
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataat 408  Q
    ||||||| || |||||||| ||||||  ||||| |||||||| |||||||||||| |||||    
T  47638977 atgaaaaattgtgtattgagtgcattaaaaattgtaatagttaactttttaaaagcataat 47638917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 19580209 - 19579892
Alignment:
Q  20 aatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnn-aaattcatccctatgtcaattttcgtttttggt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||| ||||||||||||||||    
T  19580209 aatagtgagaggaagaagatggaaagtttgatttttaaaattaaaaatttgatgtttacttttttttaaattcatccctatgttaattttcgtttttggt 19580110  T
Q  119 tttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgac 218  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||||    
T  19580109 tttagtccctctcatgccatattatcaacgtttgccaacttagaacctgccacgtaggcctttgttagccaccaaaacgtttttgttgacggaagctgac 19580010  T
Q  219 ggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggac 318  Q
    | |||||||||||| |||||||||||||||||| |||||||||||||||||       |||||| |||||||||| |||| |||||||||||| | |||     
T  19580009 gacaaggaccttttccaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttacaaggaccaaaaccaaaaatgcgcgaacttatacggag 19579910  T
Q  319 catttacatatttaagcc 336  Q
    ||||||||||||||||||    
T  19579909 catttacatatttaagcc 19579892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 101 - 336
Target Start/End: Complemental strand, 19596578 - 19596343
Alignment:
Q  101 tcaattttcgtttttggttttagtccctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgttt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  19596578 tcaattttcgtttttggttttagtccctctcatgccatttcatcaacgtttgccaacttagaacctgccacgtaggcctccgttagccaccaaaacgttt 19596479  T
Q  201 ttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaatt 300  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||| |||||||||| |||| |    
T  19596478 ttgttgacggaagctgatggcaaggacctttttcaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttacaaggaccaaaaccaaaaat 19596379  T
Q  301 gcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| | |||| |||||||||||||||||    
T  19596378 gcgcgaacttatagggacaatttacatatttaagcc 19596343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 127 - 336
Target Start/End: Original strand, 19597829 - 19598036
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||||||| |||||||||||  ||| ||||||||  | |||||||||  || ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  19597829 ctctcatgtcatctcatcaattttt-ccaactcatgatctgccacgtgtgc-tccgttagccaccatggcgtttttgttgacggaagctgacggcaagga 19597926  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |||||| |||||||||||||||||| |||||||||||||||||       ||| || |||||||||| |||| |||||| ||||||| ||||||||||||    
T  19597927 ccttttccaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttgcaaggaccaaaaccaaaaatgcgcggacttacagggaccatttaca 19598026  T
Q  327 tatttaagcc 336  Q
    ||||||||||    
T  19598027 tatttaagcc 19598036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 11065553 - 11065713
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttag-aacnnnnnn 275  Q
    |||||||||||||| |  |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | |||||||||||| ||           
T  11065553 cctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaaaaaaaaaa 11065652  T
Q  276 ncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
     ||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  11065653 tcttacagggacgaaaaccaaaaatgcgcgaacttacaaggaccttttacatatttaagcc 11065713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 842393 - 842185
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||| |||||||||||||||  | |||||||||| ||| |||||| |  || ||||||||||||    |||||||| ||||| |||||| ||||||||||    
T  842393 ctcttatgccatctcatcaaa-tgtgccaactcataacttgccacctgtgc-tccgttagccacagtggcgtttttgttgacagaagctaacggcaagga 842296  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    || ||||||||||||||  || ||| ||||||| ||||||||        ||||||||||| |||||||||| |||||||||||||| ||||| | ||||    
T  842295 ccattttcaaaaggttaagaagatacagggtttattttagaaaaaaaaaacttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttataca 842196  T
Q  327 tatttaagcca 337  Q
    |||||||||||    
T  842195 tatttaagcca 842185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 12600104 - 12599897
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||| ||||||||||||| ||||||||||||  | |||||| ||  || |||||||| ||||   | |||||| |||||| ||| ||||||||||||    
T  12600104 ctctcattccatctcatcaac-tttgccaactcatgaactgccatgtgtgc-tccgttagtcaccgtggtgtttttgttgacgaaagttgacggcaagga 12600007  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |||||| |||||||||| ||||||| ||||||||||||| |||       |||| |||||| |||||||||| || ||||| ||||| | |||| |||||    
T  12600006 ccttttccaaaaggttagcaaaatacagggtttgttttataacaaaaaaacttaaagggacgaaaacaaaaaatgtgcgaaattacaggaaccacttaca 12599907  T
Q  327 tatttaagcc 336  Q
    ||||||||||    
T  12599906 tatttaagcc 12599897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 28050212 - 28050312
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||||||| ||||||| |||| |||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  28050212 ctctcatgtcatctcagcaacttttgccaactcagaacgtgccacctaggcctccgttactcaccaaagcgtttttgttgacggaacctgacggcaagga 28050311  T
Q  227 c 227  Q
    |    
T  28050312 c 28050312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 336
Target Start/End: Original strand, 19402022 - 19402181
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttaga-acnnnnnnn 276  Q
    ||||||||||||| |  || ||||| |||||  |||||||||||||||||||||||||||||||||| || ||| | ||||| ||||||| |            
T  19402022 ctccgttagccacaatggcatttttgttgacataagctgacggcaaggacctttttcaaaaggttatgaagatacaaggtttattttagagaaaaaaaat 19402121  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||||    
T  19402122 cttacagggacgaaaacaaaaaatgtgcgaacttacaaggaccttttacatatttaagcc 19402181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 342
Target Start/End: Original strand, 30321064 - 30321229
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn 276  Q
    |||||||||||||| |  | |||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||||||            
T  30321064 cctccgttagccacaatggtgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaaaaaaaaat 30321163  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaat 342  Q
    ||||||||||| ||||| |||| ||| ||||||||||  |||| ||||||||||||| || |||||    
T  30321164 cttacagggacgaaaaccaaaaatgcacgaacttacagagaccttttacatatttaaaccttaaat 30321229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 28874485 - 28874415
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  28874485 tttaatgaaaaattttgtattgaatgcattggaaattataatagttgatttttcaaaagaataattactaa 28874415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 26669293 - 26669374
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg 419  Q
    ||||| ||||||||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||||| ||||||||    
T  26669293 taaatttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaataattattaaatatg 26669374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 1841069 - 1840997
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  1841069 tttaattaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattattaaat 1840997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 340
Target Start/End: Original strand, 20773294 - 20773504
Alignment:
Q  128 tctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggac 227  Q
    |||||||||||||||||||  | ||||||||||  ||||||||| |  || ||| |||||||| |  || ||||| ||||| |||| |||||||||||||    
T  20773294 tctcatgccatctcatcaaa-tgtgccaactcatgacctgccacctgtgc-tccattagccacaatggcatttttgttgacagaaggtgacggcaaggac 20773391  T
Q  228 ctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacat 327  Q
    | ||||||||||||||  || ||| | ||||| ||||||||        ||||||||||  |||||||||| ||||| |||||| |  |||| |||||||    
T  20773392 cattttcaaaaggttaagaagatacaaggtttattttagaaaaataaaacttacagggatgaaaacaaaaaatgcgcaaacttatagagaccttttacat 20773491  T
Q  328 atttaagccataa 340  Q
    |||||||||||||    
T  20773492 atttaagccataa 20773504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 843422 - 843580
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnct 278  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| ||||||  ||||||||        ||    
T  843422 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaaaaaaaaaact 843521  T
Q  279 tacagggac-caaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    | |||||||  ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  843522 tgcagggacgaaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 843580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 32823763 - 32823697
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatta 410  Q
    |||||||||||||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||    
T  32823763 tttaatgaaaagttgtgtattgaatgcattgaaaattgtaataattgacttttcaaaagaataatta 32823697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 2692450 - 2692522
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||| |||||| | | ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  2692450 tttaataaaaagttgtgtattcacttcattggaaattgtaatagttgactttttaaaataataattactaaat 2692522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 17215703 - 17215775
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||| || | |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  17215703 tttaataaaaaattgtttattgaatgcattgaaaattgtaatagttgactttttaaaaaaataattactaaat 17215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 30739692 - 30739613
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||||||| || |||||||||||||||||||||  ||  |||| ||||||||| ||||||||||||||||    
T  30739692 ataaatttttaatgaaaaattgtgtattgaatgcattggaaatcgtaccagttaactttttaatagaataattactaaat 30739613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 31855140 - 31855078
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    ||||||||||| || | |||||||||||||||||||| |||||||||||||||||||| ||||    
T  31855140 tttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgactttttaaaataata 31855078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 7421751 - 7421681
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    ||||||| |||||| ||||||||| ||||| ||||| |||||||||||||  |||||||||||||| ||||    
T  7421751 aaaagttgtgtattaaatgcattgaaaattgtaatatttgactttttaaataaataattactaaatttgga 7421681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 337
Target Start/End: Original strand, 7800139 - 7800297
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnc 277  Q
    ||||||||||||| |  |||||||| || ||  ||||||| |||||| ||||||| |||||| |||  || ||| | ||||| ||||||||        |    
T  7800139 ctccgttagccacaatggcgtttttgttaacataagctgatggcaagaaccttttccaaaagtttaagaatatacaaggtttattttagaa-aaaaaatc 7800237  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcca 337  Q
    |||||||||| |||||||||||||||||||||||||   | | |||||||||||||||||    
T  7800238 ttacagggacgaaaacaaaaattgcgcgaacttacataaatcttttacatatttaagcca 7800297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 27778826 - 27778768
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgacttttt-aaaagaataattactaaat 416  Q
    |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  27778826 tgtattgaatgcattgaaaattataatcgttgactttttaaaaaaaataattactaaat 27778768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 3766359 - 3766298
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||||||| |||||| |||  ||||| ||||| ||||||||||||||||||||||    
T  3766359 atgaaaagttatgtaatgaatgtattataaattgtaataattgactttttaaaagaataatt 3766298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 9762885 - 9762828
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaa 404  Q
    ||||||||||| |||| |||||| ||| |||||||||||| |||||||||||||||||    
T  9762885 aatgaaaagttgtgtactgaatgtattagaaattataataattgactttttaaaagaa 9762828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 23399189 - 23399124
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||| |  |||| ||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  23399189 aaaagttatgcaacgaatacattgaaaattataatagttaactttttaaaagaataatttctaaat 23399124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 7796808 - 7796749
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| ||||| |||| |||||||||||||  ||||| ||||||||||||||||    
T  7796808 cttacagggacaaaaaccaaaaatgcgcgaacttactgggaccttttacatatttaagcc 7796749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 5446682 - 5446752
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    |||||| ||||||  || ||||||||||||| ||||| ||| |||||||| || |||||||||||||||||    
T  5446682 tttaattaaaagtggtgcattgaatgcattgaaaattgtaacagttgactattcaaaagaataattactaa 5446752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 9301991 - 9301922
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgacttttt-aaaagaataattactaaat 416  Q
    |||||| ||| | |||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||||    
T  9301991 atgaaacgttgtatattcaatgcattggaaataataattgttgattttttaaaaagaataattactaaat 9301922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 30801827 - 30801766
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaat 405  Q
    |||||| ||||||| |||||||||||||||| ||||||||||| ||  ||||| ||||||||    
T  30801827 tttaattaaaagttgtgtattgaatgcattgaaaattataatacttagcttttcaaaagaat 30801766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 1479127 - 1479184
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||||| ||||| | ||| ||| |||||||||||||| ||||||||||    
T  1479127 tgtattcaatgcattgaaaattgtcataattgcctttttaaaagaatgattactaaat 1479184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 19293477 - 19293538
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||   |||||| ||||| ||||||| |||||||| ||||||||||| |||||||    
T  19293477 atgaaaagttggttattgagtgcatcggaaattgtaatagttaactttttaaaataataatt 19293538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 34235413 - 34235466
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattact 412  Q
    |||||| |||| |||| ||||| |||||||| | ||||||||||||||||||||    
T  34235413 tgtattaaatgtattgaaaattgtaatagttaattttttaaaagaataattact 34235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 178 - 336
Target Start/End: Original strand, 55019258 - 55019416
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnc 277  Q
    |||||| ||||||||  | |||||| |||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||       |    
T  55019258 ctccgtaagccaccatggtgtttttgttgacggaagttgacggcaaggaccttttctaaaaggttatcaaaatacagggtttgttttagaacaaaaaaac 55019357  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||||||  |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  55019358 ttacagggaagaaaacaaaaaatgcgcgaaattacaaggaccatttacatatttaagcc 55019416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 4906336 - 4906129
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | |||||||||| ||| |||||| |  || ||||||||||||    |||||||| ||||| |||||| ||||||||||    
T  4906336 ctctcatgccatctcatcaaa-tgtgccaactcataacttgccacctgtgc-tccgttagccacagtggcgtttttgttgacagaagctaacggcaagga 4906239  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    || ||||||||||||||  || ||| ||||||| ||||||||        ||||||||||| ||||| |||| |||||||||||||| ||||| ||||||    
T  4906238 ccattttcaaaaggttaagaagatacagggtttattttagaaaaaaaaaacttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttaca 4906139  T
Q  327 tatttaagcc 336  Q
    ||||||||||    
T  4906138 tatttaagcc 4906129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 4932205 - 4931998
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | |||||||||| ||| |||||| |  || ||||||||||||    |||||||| ||||| |||||| ||||||||||    
T  4932205 ctctcatgccatctcatcaaa-tgtgccaactcataacttgccacctgtgc-tccgttagccacagtggcgtttttgttgacagaagctaacggcaagga 4932108  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    || ||||||||||||||  || ||| ||||||| ||||| ||        ||||||||||| ||||| |||| |||||||||||||| ||||| ||||||    
T  4932107 ccattttcaaaaggttaagaagatacagggtttattttaaaaaaaaaaaacttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttaca 4932008  T
Q  327 tatttaagcc 336  Q
    ||||||||||    
T  4932007 tatttaagcc 4931998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 51835006 - 51834915
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  51835006 taaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttgactttttaaaagaataattgctaaatttaggatgcttaa 51834915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 50341881 - 50341964
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    ||||| || ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  50341881 taaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttgactttttaaaagaataattactaaatttgga 50341964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 179 - 337
Target Start/End: Original strand, 4907363 - 4907521
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnct 278  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| ||||||  ||||||||        ||    
T  4907363 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaaaaaaaaaact 4907462  T
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcca 337  Q
    | ||||||| ||||| |||| |||||||||||||| ||||| |||||||||||||||||    
T  4907463 tgcagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcca 4907521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 336
Target Start/End: Original strand, 29757459 - 29757667
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | |||||||||| ||| |||||| |  || ||||||||||||    |||||||| ||||| |||||| ||||||||||    
T  29757459 ctctcatgccatctcatcaaa-tgtgccaactcataacttgccacctgtgc-tccgttagccacagtggcgtttttgttgacagaagctaacggcaagga 29757556  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttag-aacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttac 325  Q
    || ||||||||||||||  || ||| ||||||| |||||| ||        ||||||||||| ||||| |||| |||| ||||||||| ||||| |||||    
T  29757557 ccattttcaaaaggttaagaagatacagggtttattttagaaaaaaaaaaacttacagggacgaaaaccaaaaatgcgtgaacttacagggaccttttac 29757656  T
Q  326 atatttaagcc 336  Q
    |||||||||||    
T  29757657 atatttaagcc 29757667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 29756429 - 29756272
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnct 278  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| ||||||  ||||||||        ||    
T  29756429 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaaaaaaaaaact 29756330  T
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    | ||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  29756329 tgcagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 29756272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 35777719 - 35777791
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  35777719 tttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaat 35777791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 50427081 - 50426990
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg-gatgcttaa 428  Q
    ||||| |||||||||||||| ||| |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||    
T  50427081 taaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaatagttgacttttcaaaagaataattactaaatttgagatgcttaa 50426990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 31429360 - 31429286
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||    
T  31429360 aatgaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataatttttaaatatgga 31429286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 418
Target Start/End: Complemental strand, 41462135 - 41462061
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat 418  Q
    ||||||||||| ||||||||| |||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  41462135 tttaatgaaaaattatgtattaaatgcataagaaattgtaatagttgactttttaaaagaataattactaaatat 41462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 8297957 - 8297872
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| || |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| | ||||||||||    
T  8297957 tttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataattactaaatttgggatgcttaa 8297872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 38158536 - 38158621
Alignment:
Q  183 ttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaa 268  Q
    |||||||||| || |||||| |||||| ||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  38158536 ttagccaccatagtgtttttgttgacgaaagttgacggcaaggaccttttccaaaaggttatcgaaatacagggtttgttttagaa 38158621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 37138186 - 37138254
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||    
T  37138186 atgaaaagttgtgtattgagtgcattggaaattataatagttgactttttaaaagaatagttgctaaat 37138254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 47995757 - 47995829
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| ||||||||||||    
T  47995757 tttaatgaaaagttatgtattgaatgcattgaaaattgtaataattaactttttaaaagagtaattactaaat 47995829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 22674310 - 22674154
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnc 277  Q
    |||||||||||||    |||||||| ||||| |||||| || ||||||||| ||||||||||||||  || ||| ||||||| ||||||||        |    
T  22674310 ctccgttagccacagtggcgtttttgttgacagaagctaacagcaaggaccattttcaaaaggttaagaagatacagggtttattttagaaaaaaaaaac 22674211  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaag 334  Q
    ||||| |||| |||||||||| |||||||||||| | ||||| ||||||||||||||    
T  22674210 ttacaaggacgaaaacaaaaaatgcgcgaacttatagggaccttttacatatttaag 22674154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 4933232 - 4933390
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaa-cnnnnnnnc 277  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| ||||||  ||||||||         |    
T  4933232 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaagaaaaaaaac 4933331  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    || ||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  4933332 ttgcagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 4933390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 7852564 - 7852649
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||| |||||| ||||||||| ||||| |||||||| | |||||||||||||||||||||||| | ||||||||||    
T  7852564 tttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagttaattttttaaaagaataattactaaatttaggatgcttaa 7852649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 45900173 - 45900254
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||| | ||||||||||    
T  45900173 atgaaaagttgtgtattgaatgcattggaaattgtgatagttgactttataaaagaataattgctaaatttaggatgcttaa 45900254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 49084420 - 49084493
Alignment:
Q  344 tttaatgaaaagttatgtattgaatg-cattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||| ||||||||||  ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  49084420 tttaatgaaaagttgtgtattgaatttcattgaaaattgtaatagttgactttttaaaagaataattactaaat 49084493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 49400698 - 49400613
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||  |||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||    
T  49400698 tttaatgaaaagtcgtgtattaaatacattggaaattgtaatagttgattttttaaaagaataattactaaatttaggatgcttaa 49400613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 7444405 - 7444491
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgac-tttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||| |||||||| |||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||| | ||||||||||    
T  7444405 tttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttgacttttttaaaagtataattactaaatttgggatgcttaa 7444491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 20394709 - 20394639
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||    
T  20394709 tgtattgaatgtattggaaattgtaatagttcactttttaaaagaataattactaaatttgggatgcttaa 20394639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 37440910 - 37440840
Alignment:
Q  346 taatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||| ||||||||||||  ||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  37440910 taatgaaaaattatgtattgaacacattgaaaattgtaatagttgactttttaaaataataattactaaat 37440840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 51736433 - 51736363
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    ||||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  51736433 aaaagttgtgtattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaatttgga 51736363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 333
Target Start/End: Complemental strand, 39665462 - 39665274
Alignment:
Q  149 tttgccaactcagaacctgccacg-taggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaa 247  Q
    |||||||||||||||| ||||||| || ||||  | ||  |||||  || ||||| |||||  |||||||||  |||||| |||| ||||||||||||||    
T  39665462 tttgccaactcagaacttgccacggtatgcctttgatacacaccatggcatttttgttgacaaaagctgacgataaggactttttccaaaaggttatcaa 39665363  T
Q  248 aatatagggtttgttttagaacnnnnnnn---cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaa 333  Q
    |||| | ||||||||||||||           ||||||  ||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  39665362 aatacaaggtttgttttagaaagaaaaaaaaacttacatagacgaaaacaaaaaatgcgcgaacttacagggaccatttacatatttaa 39665274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 34391727 - 34391799
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||| |||||||| ||||||||||||| |||||  ||||||| ||||||||||||||||||||    
T  34391727 tttaataaaaagttgtgtattgattgcattggaaattgtaataactgactttataaaagaataattactaaat 34391799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 23702456 - 23702398
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagc 335  Q
    |||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  23702456 cttatagggacgaaaacaaaaaatgcgcgaacttacaaggaccttttacatatttaagc 23702398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 336
Target Start/End: Original strand, 23703672 - 23703922
Alignment:
Q  89 ttcatccctatgtcaattttcgtttttggttttagtcc----ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgtt 184  Q
    ||||||||| ||||||||| |||||||| |||||||      ||||||||||||||||||||  | ||||||||||  | |||||||||  || ||||||    
T  23703672 ttcatccctgtgtcaatttacgtttttgattttagttatcatctctcatgccatctcatcaaa-tgtgccaactcatgaactgccacgtgtgc-tccgtt 23703769  T
Q  185 agccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaa-cnnnnnnncttacag 283  Q
    | |||| |  |||||||| ||||| |||||||||| ||||||   ||||||||||||||  || ||| | ||||  ||||||||         |||||||    
T  23703770 aaccactatggcgtttttgttgacagaagctgacgacaaggaatattttcaaaaggttaagaagatagaaggttcattttagaagaaaaaaaacttacag 23703869  T
Q  284 ggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||  ||||| |||| |||||||||||| | ||||| ||||||||||||||||    
T  23703870 ggatgaaaaccaaaaatgcgcgaacttagagggaccttttacatatttaagcc 23703922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 25115290 - 25115355
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| |||||| | ||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  25115290 aaaagttgtgtattcactgcattggaaattgtaatagttaactttttaaaataataattactaaat 25115355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 27953061 - 27953145
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg-gatgcttaa 428  Q
    ||||| |||||||| |||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||||    
T  27953061 tttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataataa-tactaaatttgagatgcttaa 27953145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 7108306 - 7108420
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | ||||||||||  | |||||||||  || ||||||||||||||   | ||||| ||||| |||||||||||||||||    
T  7108306 ctctcatgccatctcatcaaa-tgtgccaactcatgaactgccacgtgtgc-tccgttagccaccatgacatttttgttgacagaagctgacggcaagga 7108403  T
Q  227 cctttttcaaaaggtta 243  Q
    |  ||||||||||||||    
T  7108404 ctattttcaaaaggtta 7108420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 53014226 - 53014298
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||| ||||||||||| |||||||||| |||||||| | |||||||||  |||||||||||||    
T  53014226 tttaataaaaagttgtgtattgaatgtattggaaattgtaatagttaattttttaaaaagataattactaaat 53014298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 8261194 - 8261139
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaa 399  Q
    ||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||    
T  8261194 tttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttgactttttaa 8261139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 8274611 - 8274556
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaa 399  Q
    ||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||    
T  8274611 tttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttgactttttaa 8274556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 31174664 - 31174743
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||||||||||||| |||| |||||  |||| ||||| ||| |||| ||||||||||||||||||||| ||||    
T  31174664 ataaatttttaatgaaaagttgtgtaatgaatatattgaaaattgtaacagttaactttttaaaagaataattacaaaat 31174743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 335
Target Start/End: Complemental strand, 35785370 - 35785166
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | ||||||||||  | || ||||||  || ||||||||||||||    |||||| ||||| |||| ||||||||| ||    
T  35785370 ctctcatgccatctcatcaaa-tgtgccaactcatgaactaccacgtgtgc-tccgttagccaccatgatgtttttgttgacagaagttgacggcaaaga 35785273  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |  ||||||||||||||  || ||| | ||||  ||||||||        ||||||||||| |||||||||| | |||||||||||| ||| | ||||||    
T  35785272 ctattttcaaaaggttaagaagatacatggttcattttagaa--aaaaaacttacagggacaaaaacaaaaaatacgcgaacttacatggatcttttaca 35785175  T
Q  327 tatttaagc 335  Q
    |||||||||    
T  35785174 tatttaagc 35785166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 334
Target Start/End: Original strand, 35786595 - 35786737
Alignment:
Q  195 gcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttaga---acnnnnnnncttacagggaccaaa 291  Q
    |||||||| ||||| |||||  |||||||||||| ||||||||||||||  || ||| ||||||| |||||||   |        |||||| |||| |||    
T  35786595 gcgtttttgttgacagaagccaacggcaaggaccattttcaaaaggttaagaatatacagggtttattttagaaagaaaaaaaaacttacaaggacgaaa 35786694  T
Q  292 acaaaaattgcgcgaacttacaaggaccatttacatatttaag 334  Q
    || |||| |||||||||||||| ||||| ||||||||||||||    
T  35786695 accaaaaatgcgcgaacttacagggaccttttacatatttaag 35786737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 37383769 - 37383859
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa-tatggatgcttaa 428  Q
    ||||| |||||| ||||||| | ||||||||||||||||| ||||||  ||||| ||||| ||||||||||||||||| | |||||||||||    
T  37383769 taaatttttaataaaaagttgtatattgaatgcattggaagttataacggttga-ttttttaaagaataattactaaattttggatgcttaa 37383859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 24229666 - 24229738
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| || |||||| ||||||||| ||||| | ||| || |||||| |||||||||||||||||||    
T  24229666 tttaatgaaaaattgtgtattaaatgcattgaaaattgtgataatttacttttaaaaagaataattactaaat 24229738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 36702870 - 36702814
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaa 400  Q
    ||||||||||| || |||||||||||||||| ||||| ||||| |||||||||||||    
T  36702870 tttaatgaaaaattgtgtattgaatgcattgaaaattgtaataattgactttttaaa 36702814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 42223041 - 42222969
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||| || |||||||||||||||| |||||||||||||||  ||||||||  |||| |||||||||    
T  42223041 tttaataaaaaattgtgtattgaatgcattgaaaattataatagttggttttttaaataaatagttactaaat 42222969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 23605974 - 23606019
Alignment:
Q  371 attggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||    
T  23605974 attggaaattgtaataattaactttttaaaagaataattactaaat 23606019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 23504823 - 23504755
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||  |||||||| ||| ||| | ||||| |||||||||| ||||||||||||||||| ||||||    
T  23504823 atgaaaatgtatgtattcaatacatcgaaaattttaatagttgattttttaaaagaataatttctaaat 23504755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 24175425 - 24175503
Alignment:
Q  350 gaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||| |||||| ||||||||  ||||| |||||||| |||||| ||||||||| ||||||||| | ||||||||||    
T  24175425 gaaaagttgtgtattaaatgcatttaaaattgtaatagtttactttt-aaaagaatatttactaaatttaggatgcttaa 24175503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 22309140 - 22309194
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaa 333  Q
    ||||||||| ||||| ||||   |||||||||||| |||||||||||||||||||    
T  22309140 tacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaa 22309194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 39195751 - 39195805
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttga-ctttttaaaa 401  Q
    |||||||||| |||||| ||||||||| ||||| |||||||||| ||||||||||    
T  39195751 atgaaaagttgtgtattcaatgcattgaaaattgtaatagttgacctttttaaaa 39195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 2671598 - 2671541
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||| |||| |||||||||||||| ||||| ||| | ||||||||||    
T  2671598 tacagggactaaaaccaaaaatgcgcgaacttacagggacctttttcttatttaagcc 2671541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 2671774 - 2671737
Alignment:
Q  93 tccctatgtcaattttcgtttttggttttagtccctct 130  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  2671774 tccctatgtaaatttgcgtttttggttttagtccctct 2671737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 31690464 - 31690392
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    |||||||||| |||||| ||||||||| |||||  || |||||||||||| ||| |||||||| ||||| ||||    
T  31690464 atgaaaagttgtgtattcaatgcattgaaaattgcaacagttgacttttt-aaataataattaataaatttgga 31690392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 23689936 - 23689896
Alignment:
Q  376 aaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||| || ||||||| ||||||||||||||||||||||||    
T  23689936 aaattgtattagttgattttttaaaagaataattactaaat 23689896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 55)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 52793911 - 52793704
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||| ||||||||||||| ||||||||||||| | |||||||||  || || |||| ||||||   ||||||| |||||||||||||| ||||||||    
T  52793911 ctctcattccatctcatcaac-tttgccaactcaggaactgccacgtgtgcttc-gttaaccaccatgacgtttttgttgacggaagctgaaggcaagga 52793814  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |||||| ||||| |||| ||||||| |||||||||||||||||       ||||||||||| |||||||||| || ||||||||||| ||||| || |||    
T  52793813 ccttttccaaaatgttagcaaaatacagggtttgttttagaacaaagaaacttacagggacgaaaacaaaaaatgagcgaacttacagggacctttaaca 52793714  T
Q  327 tatttaagcc 336  Q
    ||||||||||    
T  52793713 tatttaagcc 52793704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 127 - 346
Target Start/End: Complemental strand, 42300660 - 42300444
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||| ||||||||||||| ||||||||||||  | |||||||||  || ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  42300660 ctctcattccatctcatcaac-tttgccaactcatgaactgccacgtgtgc-tccgttagccaccatggcgtttttgttgacggaagctgacggcaagga 42300563  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |||||| |||||||||| ||||||| || ||||||||||||||       |||||||| || |||||||||| | |||||| ||||| |||| | |||||    
T  42300562 ccttttccaaaaggttagcaaaatacagagtttgttttagaacaaaataacttacaggaacgaaaacaaaaa-tacgcgaaattacagggactacttaca 42300464  T
Q  327 tatttaagccataaatattt 346  Q
    ||||||| || ||| |||||    
T  42300463 tatttaaaccttaattattt 42300444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 27524602 - 27524265
Alignment:
Q  23 agtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggtttta 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       || ||||||||||||| |||||  |||||||||||||    
T  27524602 agtgagaggaagaagatggaaagtttggtttttaaaattcaaaatttgatgtttacgtttttaaatttcatccctatgtaaatttgtgtttttggtttta 27524503  T
Q  123 gtcc----------------------ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgttt 200  Q
    ||||                      ||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  27524502 gtccctgtactaacactacttatcatctctcatgccatctcatcaacttttgccaactcagaacctgccacgagtgcctccgttacccaccaaagcgttt 27524403  T
Q  201 ttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnnc--ttacagggaccaaaacaaaaa 298  Q
    || |||||  || ||||||||| ||||  ||| |||||||     |||||| | || ||| ||||||||       |  |||||||||| ||||||||||    
T  27524402 ttgttgacaaaacctgacggcagggacgatttccaaaaggaataaaaaatacaagggttgatttagaacaaaaacacatttacagggacaaaaacaaaaa 27524303  T
Q  299 ttgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
     ||||| || ||| | ||||| ||||||||||||||||    
T  27524302 atgcgctaaattatagggaccttttacatatttaagcc 27524265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 9627500 - 9627640
Alignment:
Q  196 cgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaa 295  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||       |||||||| || |||||||    
T  9627500 cgtttttgttgacgaaagctgacggcaaggacctttttcaaaaggttagcaaaatacagggtttattttagaacaaaaaaacttacaggaacgaaaacaa 9627599  T
Q  296 aaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||| ||||||||||||||  |||| ||||||||||||||||    
T  9627600 aaaatgcgcgaacttacagagaccttttacatatttaagcc 9627640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 8322679 - 8322519
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn 276  Q
    |||||||||||||| |  |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||||||            
T  8322679 cctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaa-aaaaaat 8322581  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccat 338  Q
    ||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  8322580 cttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagccat 8322519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 177 - 336
Target Start/End: Complemental strand, 31810149 - 31809989
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn 276  Q
    |||||||||||||| |  |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||| ||||            
T  31810149 cctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgtttcagaaaaaaaaaa 31810050  T
Q  277 -cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
     ||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  31810049 tcttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagcc 31809989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 8323339 - 8323498
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn 276  Q
    |||||||||||||| |  |||||||| || || ||||||||||| ||||||||||||||||| ||||| || ||| | ||| ||||||||||            
T  8323339 cctccgttagccacaatggcgtttttgttaacagaagctgacggtaaggacctttttcaaaatgttataaagatacaaggtctgttttagaaaaaaaaat 8323438  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  8323439 cttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 8323498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 31815670 - 31815829
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn 276  Q
    ||||||||||||||    |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||| ||||            
T  31815670 cctccgttagccacagtggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgtttcagaaaaaaaaat 31815769  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  31815770 cttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 31815829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 47187841 - 47187926
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  47187841 tttaatgaaaaattatgtattgaatgcattggaaattataatagttgattttttaaatgaataattactaaatttgggatgcttaa 47187926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 39150668 - 39150583
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  39150668 tttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaaatttaggatgcttaa 39150583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 2864228 - 2864153
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgg 420  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  2864228 tttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgacttttt-aaagaataattcctaaatatgg 2864153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 28253354 - 28253467
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgttta-cnnnnnnnaaattcatccctatgtcaattttcgtttttg 116  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |       || ||||||||||||| ||||| ||||||||    
T  28253354 agaatagtgacaggaagaagatgaaaagtttggtttttaaaattcaaaatttgatgtttacctttttttaatttcatccctatgtaaatttacgtttttg 28253453  T
Q  117 gttttagtccctct 130  Q
     |||||||||||||    
T  28253454 attttagtccctct 28253467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 44329675 - 44329607
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg 419  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  44329675 aaaaattatgtattgaatgcattgaaaattataatagttgactttttaaaagaataattattaaatatg 44329607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 37402370 - 37402474
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||       || ||||||||||||| ||||| | |||||||    
T  37402370 agaatagtgagaggaagaagatggacagtttggtttttaaaattcaaaatttgatttttacgttttttaatttcatccctatgtaaatttgcatttttgg 37402469  T
Q  118 tttta 122  Q
    |||||    
T  37402470 tttta 37402474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 28252139 - 28251931
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||| |||||||||| |||  |||||||||| | ||||||||||||  |||||||||| ||| ||||| |||||| ||||||||| ||||||||| |||    
T  28252139 ctctcttgccatctcagcaaattttgccaacttataacctgccacgtgtgcctccgttaccca-caaagtgtttttgttgacggaacctgacggcaggga 28252041  T
Q  227 cctttttcaaaaggttatc-aaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttac 325  Q
    |  |||||||| ||  ||| |||||| | || ||||||||||||       ||||||||||| ||||| |||| ||||| || ||||| ||||| ||| |    
T  28252040 cgattttcaaatgg-aatcaaaaatacaagggttgttttagaacaaaaaaacttacagggacgaaaaccaaaaatgcgctaaattacagggaccttttgc 28251942  T
Q  326 atatttaagcc 336  Q
    |||||||||||    
T  28251941 atatttaagcc 28251931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 38748745 - 38748826
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgg-atgcttaa 428  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  38748745 atgaaaagttgtgtattgagtgcattgaaaattataatagttgactttttaaaagaataatttctaaatttggtatgcttaa 38748826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 9626628 - 9626469
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn- 276  Q
    |||| |||||||| | ||||||||| ||||| |||||||||||||| |||| ||||||||||||||  || | | ||||||| ||||||||             
T  9626628 ctccattagccacaatagcgtttttgttgacagaagctgacggcaatgaccgttttcaaaaggttaataagaaagagggtttattttagaagaaaaaaaa 9626529  T
Q  277 -cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagc 335  Q
     ||||||||||| |||||||||| | |||||||||||| ||||| |||||||||||||||    
T  9626528 acttacagggacgaaaacaaaaaatacgcgaacttacagggaccttttacatatttaagc 9626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 8794495 - 8794417
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  8794495 aaaagttgtgtatggagtgcattgaaaattataatagttgactttttaaaagaataattactaaatttaggatgcttaa 8794417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 39156332 - 39156275
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  39156332 tgtattgaatgcattggaaattgtagtagttgactttttaaaagaataattactaaat 39156275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 401
Target Start/End: Original strand, 43397035 - 43397092
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaa 401  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  43397035 tttaatgaaaagttgtgtattaaatgcattggaaattataatagttgactttttaaaa 43397092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 28252239 - 28252183
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgt 74  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  28252239 agaatagtgagaggaagaagatggaaaatttggtttttaaaattcaaaatttgatgt 28252183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 38491307 - 38491235
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| || |||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  38491307 tttaatgaaaaattgtgtattgaatgcattgtaaattgtaatagttgactttttaacataataattactaaat 38491235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 37401340 - 37401229
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattt-tcgtttttg 116  Q
    |||| ||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||       || ||||||||||||| ||||| |  ||||||    
T  37401340 agaacagtgacaggaagaagatgaaaagtttggtttttaaaaatcaaaatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttg 37401241  T
Q  117 gttttagtccct 128  Q
    ||||||||||||    
T  37401240 gttttagtccct 37401229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 28253486 - 28253599
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||||||||||||||| |||  |||||||||||| ||| || || |   |||||||||| |||||||||||||||| ||||||||| ||||||||  |||    
T  28253486 ctctcatgccatctcagcaaattttgccaactcataacatgtcatgcgtgcctccgttatccaccaaagcgtttttgttgacggaatctgacggctggga 28253585  T
Q  227 cctttttcaaaagg 240  Q
    |  |||||||||||    
T  28253586 cgattttcaaaagg 28253599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 428
Target Start/End: Original strand, 34232735 - 34232812
Alignment:
Q  352 aaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa-tatggatgcttaa 428  Q
    |||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| || ||||||||||    
T  34232735 aaagttgtgtattgaaagcattgaaaattgtaatagttgactttttaaaagaataattgctaaattaaggatgcttaa 34232812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 48022373 - 48022458
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||| ||||  |||||||||||||||||| |||||  ||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  48022373 tttaataaaaaaatatgtattgaatgcattgaaaattgcaatagttaactttttaaaacaataattactaaatatgggatgcttaa 48022458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 9419549 - 9419653
Alignment:
Q  26 gagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggttttagtc 125  Q
    |||| ||||||| ||||||| ||| |||||||| |||||||||||||| ||||       || ||||||||||||| ||| |||||||||||||||| ||    
T  9419549 gagatgaagaaggtggaaagattggtttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaatattcgtttttggttttattc 9419648  T
Q  126 cctct 130  Q
    |||||    
T  9419649 cctct 9419653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 26734585 - 26734426
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttaga--acnnnnnnn 276  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| ||||||  ||||| |  |            
T  26734585 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttaaaagaaaaaaaaa 26734486  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||| ||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  26734485 cttgcagggacgaaaaccaaaaatgcgcgaacttacatggaccttttacatatttaagcc 26734426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 44329555 - 44329484
Alignment:
Q  339 aaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatta 410  Q
    |||| |||||| ||||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||    
T  44329555 aaatttttaataaaaagttatatattaaatgcactgaaaattataataattgactttttaaaagaataatta 44329484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 44829358 - 44829273
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||| ||||||| ||||||||||| |||  ||||| ||||||||||| |||| |||||||||||||||||| | ||||||||||    
T  44829358 tttaataaaaagttgtgtattgaatgtattaaaaattgtaatagttgacctttttaaagaataattactaaatttgggatgcttaa 44829273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 604452 - 604508
Alignment:
Q  345 ttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaa 401  Q
    |||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||    
T  604452 ttaatgaaaaattgtgtattgagtgcattggaaattataataattgactttttaaaa 604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 8365589 - 8365517
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||| |||||| | ||||||||||||||||| | ||| |||||||||| |||||||||||||||||| |||||    
T  8365589 tttattgaaaaatgatgtattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaat 8365517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 26811258 - 26811326
Alignment:
Q  350 gaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat 418  Q
    |||||||| | ||||| ||| |||||||||| |||||||| | ||||||||||||||||||||||||||    
T  26811258 gaaaagttgtatattgtatgtattggaaattctaatagttaattttttaaaagaataattactaaatat 26811326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 7212839 - 7212787
Alignment:
Q  364 tgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||||||||| |||| ||| |||||||||||| |||||||||||||    
T  7212839 tgaatgcattggaaattgtaattgttaactttttaaaagtataattactaaat 7212787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 416
Target Start/End: Original strand, 18432974 - 18433045
Alignment:
Q  345 ttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||||| | |||||||| ||||  ||||| ||| |||| || |||||||||||||||||||||||    
T  18432974 ttaatgaaaagttgtatattgaatacattaaaaattgtaacagttaacattttaaaagaataattactaaat 18433045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 39914640 - 39914690
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||| ||||    
T  39914640 tgtattgagtgcattgaaaattgtaatagttgactttttaaaagaacaatt 39914690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 42301469 - 42301581
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | |||||| |||  ||||||||| |  || |||||||||||| |  |||||||| ||||| |||||||| || |||||    
T  42301469 ctctcatgccatctcatcaaa-tgtgccaagtcatgacctgccacctgtgc-tccgttagccacaatggcgtttttgttgacagaagctgatggtaagga 42301566  T
Q  227 cctttttcaaaaggt 241  Q
    || ||||||||||||    
T  42301567 ccattttcaaaaggt 42301581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 2995018 - 2995063
Alignment:
Q  371 attggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||    
T  2995018 attgaaaattataatagtttactttttaaaataataattactaaat 2995063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 3982344 - 3982279
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| | |||| ||||||||  ||||||||||||||||||||||  || ||||||||||||||    
T  3982344 aaaagttgtctattcaatgcattataaattataatagttgactttttctaaaaataattactaaat 3982279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 6883152 - 6883201
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgacttttt 397  Q
    ||||||||||||||| |||||||||| |||||| |||||||||| |||||    
T  6883152 atgaaaagttatgtaatgaatgcatttgaaattgtaatagttgatttttt 6883201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 32562388 - 32562445
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| | ||||||| ||||| |||||||||| ||||||||| ||||||||||||||    
T  32562388 tgtattcactgcattgaaaattgtaatagttgaatttttaaaataataattactaaat 32562445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 34409805 - 34409748
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||||||||||||||||| |||| |||  |||| || |||||||||||    
T  34409805 tgtattgaatgcattggaaattataataattgattttaaaaaaaaaaaattactaaat 34409748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 11429538 - 11429486
Alignment:
Q  26 gagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttac 78  Q
    ||||||||||||| ||||||  || |||||||||||||||| |||||||||||    
T  11429538 gagaggaagaagaaggaaagagtggtttttaaaattcaaaaattgatgtttac 11429486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 17552887 - 17552847
Alignment:
Q  376 aaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  17552887 aaattataatagttgactttttaaaaaaataattattaaat 17552847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 36563786 - 36563730
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaa 404  Q
    ||||||| || |||||| ||||||||| ||||||||||||||||| |||| ||||||    
T  36563786 atgaaaaattgtgtatttaatgcattgaaaattataatagttgacgttttgaaagaa 36563730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 45640618 - 45640571
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    |||| ||||||||||| ||||||||||| |||||||||| ||||||||    
T  45640618 tgtaatgaatgcattgaaaattataataattgactttttgaaagaata 45640571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 7653743 - 7653685
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcca 337  Q
    ||||||||| |||||||||| | ||| || ||||| |||| ||||||||||||||||||    
T  7653743 tacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcca 7653685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 28360826 - 28360764
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaa 341  Q
    |||| |||| ||||| |||| ||||| |||||||||||||| || ||||||||||||| ||||    
T  28360826 tacaaggactaaaaccaaaagtgcgccaacttacaaggacctttaacatatttaagccttaaa 28360764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 43882283 - 43882249
Alignment:
Q  96 ctatgtcaattttcgtttttggttttagtccctct 130  Q
    |||||| ||||||||||||||||||||||||||||    
T  43882283 ctatgtaaattttcgtttttggttttagtccctct 43882249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 12097942 - 12097999
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||| |||| |||||||||||||  ||||| ||||| ||||||||||    
T  12097942 tacagggactaaaaccaaaaatgcgcgaacttacggggaccttttacttatttaagcc 12097999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 24437131 - 24437074
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||| ||| ||||||||||   |||||||||||| ||||| ||||||||||||||||    
T  24437131 tacagtgacgaaaacaaaaaacacgcgaacttacagggaccttttacatatttaagcc 24437074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 36145401 - 36145344
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| |||||||||| | ||| || ||||| |||| |||||||||||||||||    
T  36145401 tacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcc 36145344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 40460743 - 40460828
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaa-tatggatgcttaa 428  Q
    ||||||||||| || | ||||||||  |||||||| | ||||| |||| |||||||| ||||||||| |||| | |||||||||||    
T  40460743 tttaatgaaaaattgtatattgaataaattggaaactgtaataattgattttttaaatgaataattattaaattttggatgcttaa 40460828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 32849676 - 32849728
Alignment:
Q  26 gagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttac 78  Q
    ||||||||||||| |||||   || |||||||||||||||| |||||||||||    
T  32849676 gagaggaagaagaaggaaaaagtggtttttaaaattcaaaaattgatgtttac 32849728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 42301620 - 42301680
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcca 337  Q
    |||||| |||| |||||||||| | |||||||||| | | ||| |||||||||||||||||    
T  42301620 cttacaaggacgaaaacaaaaaatacgcgaacttagaggaaccttttacatatttaagcca 42301680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 4158 - 4316
Alignment:
Q  177 cctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnn 276  Q
    |||||||||||||| |  |||||||| || || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||||||            
T  4158 cctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaa-aaaaaat 4256  T
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||    
T  4257 cttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 4316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 48)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 335
Target Start/End: Complemental strand, 37963481 - 37963275
Alignment:
Q  128 tctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggac 227  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||   |||||||||| ||| |||| ||||||| ||||||||| ||||||||||||||    
T  37963481 tctcatgccacctcatcaacttttgccaactcaaaacctgccacgcgtgcctccgttaccca-caaaacgtttttgttgacggaacctgacggcaaggac 37963383  T
Q  228 ctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacat 327  Q
      || |||||||||||   ||||| | || |||||||| |||       |||| || ||| ||||||||||  |||| || ||||||||||| |||||||    
T  37963382 gattatcaaaaggttacgtaaatacaagggttgttttataacaaaaaaacttatagagacgaaaacaaaaaacgcgctaagttacaaggaccttttacat 37963283  T
Q  328 atttaagc 335  Q
    ||||||||    
T  37963282 atttaagc 37963275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 127 - 338
Target Start/End: Original strand, 27411091 - 27411301
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||   |||||||||| |||  ||||||||||| |||| |||| ||||||||| |||    
T  27411091 ctctcatgccacttcatcaacttttgccaactcagaacctgccacgcgtgcctccgttaccca-aaaagcgtttttgttgatggaacctgacggcaggga 27411189  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttaca 326  Q
    |  || | ||||| ||||  ||||| | || ||||||||||||       ||||||||||  ||||| | || ||||| || ||||| ||||| ||||||    
T  27411190 cgattataaaaagattatgtaaatacaagggttgttttagaacaaaaaaacttacagggataaaaaccataaatgcgctaaattacagggaccttttaca 27411289  T
Q  327 tatttaagccat 338  Q
    ||||||||||||    
T  27411290 tatttaagccat 27411301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 358185 - 357977
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | |||||||||| ||| |||||| |  || ||||||||||||    |||||||| ||||| |||||||||||||||||    
T  358185 ctctcatgccatctcatcaaa-tgtgccaactcataacttgccacctgtgc-tccgttagccacagtggcgtttttgttgacagaagctgacggcaagga 358088  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttag-aacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttac 325  Q
    || ||||||||||||||  || ||| | ||| | |||||| ||        ||||||||||| ||||| |||| |||||||||||||| ||||| |||||    
T  358087 ccattttcaaaaggttaagaagatacaaggtctattttagaaaaaaaaaaacttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttac 357988  T
Q  326 atatttaagcc 336  Q
    |||||||||||    
T  357987 atatttaagcc 357977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 35902017 - 35901932
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatggatgcttaag 429  Q
    |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||  |||||||||    
T  35902017 tttaatgaaaagttctgtattgaatgcattggaaattgtaataattgactttttaaaaaaataattattaaatataaatgcttaag 35901932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 4384149 - 4384227
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  4384149 ataaatttttaatgaaa-gttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattactaaat 4384227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 167867 - 167929
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  167867 aatgaaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaataatt 167929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 1369883 - 1369964
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||| | ||||||||||    
T  1369883 atgaaaagttatctattgaatgcattggaaattgtgatagttgactttttaaaagaataattgctaaatttaggatgcttaa 1369964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 28207710 - 28207649
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaat 405  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28207710 tttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaat 28207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 27801246 - 27801318
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  27801246 tttaataaaaagttgtgtaatgaatgcattgaaaattgtaatagttgactttttaaaagaataattactaaat 27801318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 269
Target Start/End: Original strand, 37964378 - 37964641
Alignment:
Q  27 agaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggttttagtcc 126  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| |||       |  ||||||||||||| ||||||||||||||||||||||||    
T  37964378 agaggaagaagatggaaagtttggtttttaaaattcaaaatttaatgtctacgttttt-attttcatccctatgtaaattttcgtttttggttttagtcc 37964476  T
Q  127 ct----------------------ctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttat 204  Q
    ||                      ||||||||| |||| |||| |||||||||||||||| ||||||    ||||| |||| |||  ||||||||||| |    
T  37964477 ctgtattaacactacttatgatctctcatgccacctcagcaacttttgccaactcagaacatgccacacgtgcctctgttacccagaaaagcgtttttgt 37964576  T
Q  205 tgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttagaac 269  Q
    |||||||| ||||||||| ||||  ||| ||||||||||  |||||| | || ||||||||||||    
T  37964577 tgacggaacctgacggcagggacgatttccaaaaggttacaaaaatacaagggttgttttagaac 37964641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 2888760 - 2888826
Alignment:
Q  364 tgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaag 429  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  2888760 tgaatgcattggaaattataatagttaactttttaaaaaaataattactaaatatgggatgcttaag 2888826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 3146102 - 3146036
Alignment:
Q  364 tgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaag 429  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  3146102 tgaatgcattggaaattgtaatagttaactttttaaaagaataattactaaatatgggatgcttaag 3146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 1135247 - 1135175
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||| |||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  1135247 tttaaggaaaagttgtatattgaatacattgaaaattgtaatagttgactttttaaaagaataattactaaat 1135175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 5589043 - 5588972
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat 418  Q
    |||||||| || |||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5589043 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaataattactagatat 5588972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 3520828 - 3520894
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatta 410  Q
    ||||||||||||||||||||||||||||||  ||| | |||||||||| ||||||||||||||||||    
T  3520828 tttaatgaaaagttatgtattgaatgcattaaaaactgtaatagttgattttttaaaagaataatta 3520894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 359215 - 359373
Alignment:
Q  179 tccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttag-aacnnnnnnnc 277  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||  |||||||||||||   || ||| | ||||  |||||| ||             
T  359215 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacatggttcattttagaaagaaaaaaaa 359314  T
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    || ||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  359315 ttgcagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagcc 359373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 33013127 - 33013066
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  33013127 atgaaaagttgtgtattgagtacattggaaattgtaatagttgactttttaaaagaataatt 33013066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 37813426 - 37813495
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgac-tttttaaaagaataattactaaat 416  Q
    |||||||||| |||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  37813426 atgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaat 37813495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 42636386 - 42636471
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||  || |||||||||||||| | ||||||||||    
T  42636386 tttaatgaaaagttgtgtattaaatgcattgtaaattgtaatagttgacttttttgaataataattactaaatttgggatgcttaa 42636471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 24695833 - 24695761
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||| |||||| | |||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  24695833 tttaataaaaagttgtgtattcactgcattagaaattgtaatagttgactttttaaaataataattactaaat 24695761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 269
Target Start/End: Complemental strand, 27409971 - 27409829
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||| |||| |||| |||||||||||||||| ||||||    |||||  ||| |||| ||||||||||| ||||||||| || ||||||  ||    
T  27409971 ctctcatgccacctcagcaacttttgccaactcagaacatgccacacgtgcctctattacccacaaaagcgtttttgttgacggaacctaacggcagaga 27409872  T
Q  227 cctttttcaaaaggttatcaaaatatagggtttgttttagaac 269  Q
    |  ||| ||||||||||  |||||| | || ||||||||||||    
T  27409871 cgatttccaaaaggttacgaaaatacaagggttgttttagaac 27409829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 12684507 - 12684591
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    |||||| |||||| ||||||| |||| |||||||||| |||||| |||||||||| | ||| |||||||||||| ||||| ||||    
T  12684507 ataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttgattctttgaaagaataattattaaatttgga 12684591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 27410093 - 27409992
Alignment:
Q  27 agaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttggttttagtcc 126  Q
    |||||||||||||| ||| |||| ||||||||||||||||||| |||| ||        |  ||||||||||||| |||||||||||||||||| |||||    
T  27410093 agaggaagaagatgaaaaatttggtttttaaaattcaaaatttaatgtctatgttatttattttcatccctatgtaaattttcgtttttggtttaagtcc 27409994  T
Q  127 ct 128  Q
    ||    
T  27409993 ct 27409992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 9735317 - 9735396
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||||||||||||| |||||| |||| |||| || | ||||||||||||||||| ||| |||||||| |||||    
T  9735317 ataaatttttaatgaaaagttgtgtattaaatgtattgaaagtcataatagttgacttttttaaaaaataattattaaat 9735396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 37963604 - 37963554
Alignment:
Q  27 agaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgttta 77  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  37963604 agaggaagaagatggaaaatttggtttttaaaattcaaaatttgctgttta 37963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 39884673 - 39884603
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccataaatatttaat 349  Q
    ||||||||| ||||| ||||   |||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  39884673 tacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaagccttaaatatataat 39884603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 21142537 - 21142480
Alignment:
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagc 335  Q
    ||||| |||| |||||||||| |||||||||||||| ||||| |||||||||||||||    
T  21142537 ttacaaggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagc 21142480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 12829891 - 12829963
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| |||| ||||||||||||||  |||| ||||| | |||||||||||| |||||||| |||||    
T  12829891 tttaatgaaaaattatatattgaatgcattgttaattgtaataatagactttttaaaataataattattaaat 12829963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 21143880 - 21143994
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||| ||  | |||||||||| || |||||||||  || ||||||||||||||   ||||||| ||||| |||||||||| ||||||    
T  21143880 ctctcatgccatctcattaaa-tgtgccaactcataaactgccacgtgtgc-tccgttagccaccatgacgtttttgttgacagaagctgacgacaagga 21143977  T
Q  227 cctttttcaaaaggtta 243  Q
    |  ||||||||| ||||    
T  21143978 ctattttcaaaaagtta 21143994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 12954821 - 12954742
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||| |||||| || |||||| |||  |||| |||||||||||||||| |||| |||| ||||||||||||||    
T  12954821 ataaatttttattgaaaaattgtgtattaaatctattgaaaattataatagttgatttttaaaaaaaataattactaaat 12954742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 336
Target Start/End: Complemental strand, 17706357 - 17706165
Alignment:
Q  144 caacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggtta 243  Q
    |||| ||||||||||||||| |||||||||  | |||||||| ||| | | || ||||| ||||||||| ||||||||| |||   ||| |||||||||     
T  17706357 caacttttgccaactcagaaactgccacgtgtgtctccgttacccagccatgcttttttgttgacggaacctgacggcagggatgatttccaaaaggttt 17706258  T
Q  244 tcaaaatatagggtttgttttagaacnnnnnnncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
      ||| || | || ||||||||||||       |||||| |||| ||||| ||||   ||| || ||||| ||||| ||||||||||||||||    
T  17706257 cgaaattacaagggttgttttagaacaaaaaaacttacaaggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcc 17706165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 2072439 - 2072381
Alignment:
Q  356 ttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    ||||||||| |||| ||| ||| || |||| ||||||||||||||||||||||||||||    
T  2072439 ttatgtattaaatgtattagaagttgtaatggttgactttttaaaagaataattactaa 2072381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 2250414 - 2250368
Alignment:
Q  370 cattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||    
T  2250414 cattgaaaattataatggttgactttttaaaagaataattattaaat 2250368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 33067585 - 33067531
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaa 401  Q
    ||||||||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  33067585 aatgaaaagttttgtattgaatgcattagacattgtaataattgactttttaaaa 33067531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 36900091 - 36900009
Alignment:
Q  144 caacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    |||| ||||||||| ||||| |||||||||   ||||||||| ||||||| || ||||| || |||||| |||||||||||||    
T  36900091 caacttttgccaacccagaaactgccacgtgtacctccgttatccaccaatgcttttttgttaacggaatctgacggcaagga 36900009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 17081394 - 17081463
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| || ||| | |||||| |||||| |||||||||||||||| ||| ||||||| ||||||    
T  17081394 aatgaaaagttgtgcattcattgcattagaaattgtaatagttgacttttttaaaaaataattgctaaat 17081463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 39886078 - 39886135
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||| ||||   |||||||||||| ||||||||||||||||||||||    
T  39886078 tacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaagcc 39886135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 12545034 - 12544994
Alignment:
Q  376 aaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  12545034 aaattataatagttgactttttgaaataataattactaaat 12544994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 16723225 - 16723300
Alignment:
Q  354 agttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||| ||| ||||||| |||| ||||| || ||||||| ||||||||||||||||||| |||| | ||||||||||    
T  16723225 agttgtgtgttgaatgtattgaaaattgtattagttgattttttaaaagaataattacaaaatttgggatgcttaa 16723300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 2258114 - 2258196
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| |||||| ||| ||||  ||||| ||||  || |||||||||||||||||||| ||||| | ||||||||||    
T  2258114 aatgaaaagttgtgtattaaatacattaaaaattgtaatgattaactttttaaaagaataattattaaatttgggatgcttaa 2258196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 3158039 - 3158096
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||| ||||   |||||||||||| |||| |||||||||||||||||    
T  3158039 tacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcc 3158096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 7274653 - 7274710
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||| || |||||||||| |||||||||||||| ||||| ||| | ||||||||||    
T  7274653 tacaggaactaaaacaaaaaatgcgcgaacttacagggacctttttcttatttaagcc 7274710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 9024559 - 9024502
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||||||   ||||| |||||||||| ||||| ||||||||||||||||||    
T  9024559 tgtatttaatgcataaaaaattgtaatagttgattttttgaaagaataattactaaat 9024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 15279658 - 15279691
Alignment:
Q  302 cgcgaacttacaaggaccatttacatatttaagc 335  Q
    ||||||||||||||||| ||||||||||||||||    
T  15279658 cgcgaacttacaaggacgatttacatatttaagc 15279691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 15460027 - 15460060
Alignment:
Q  302 cgcgaacttacaaggaccatttacatatttaagc 335  Q
    ||||||||||||||||| ||||||||||||||||    
T  15460027 cgcgaacttacaaggacgatttacatatttaagc 15460060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 37427277 - 37427202
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgacttttt---aaaagaataattactaaat 416  Q
    ||||||||||||||  ||||||| | ||||| ||||| ||||| |||| |||||   |||||||||||||||||||    
T  37427277 tttaatgaaaagttgagtattgattacattgaaaattgtaataattgatttttttttaaaagaataattactaaat 37427202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 32646892 - 32646840
Alignment:
Q  357 tatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||| | ||||||||  |||||| |||| ||||||||||||||||||||||    
T  32646892 tatgtaatcaatgcattaaaaattaaaatatttgactttttaaaagaataatt 32646840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 36355977 - 36356040
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattact 412  Q
    |||||||||||||| |||||| |||||||| ||||||  |||||     ||||||||||||||||||||    
T  36355977 tttaatgaaaagttgtgtattaaatgcattagaaattgcaatag-----tttttaaaagaataattact 36356040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 9276600 - 9276672
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  9276600 tttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaat 9276672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 30501163 - 30501245
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  30501163 aatgaaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaa 30501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 30541506 - 30541588
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  30541506 aatgaaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaa 30541588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 30104890 - 30104805
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||| | ||||||||||    
T  30104890 tttaatgaaaagttgtgtattgaatgcattggaaattgtaattgttgactttttaaaaaaatagttactaaatttgggatgcttaa 30104805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 2918612 - 2918689
Alignment:
Q  339 aaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||| ||| |||||||| |||||    
T  2918612 aaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgacatttttaaaaaataattattaaat 2918689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 7719290 - 7719205
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgg-atgcttaa 428  Q
    |||||||||||||| ||||||||||  |||||||||| |||||||||| |||||||||||||||||  ||||||||| ||||||||    
T  7719290 tttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaataatttttaaatatggtatgcttaa 7719205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 16667312 - 16667397
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg-gatgcttaa 428  Q
    ||||||||||| || ||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||    
T  16667312 tttaatgaaaaattgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattattaaatttgtgatgcttaa 16667397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 18229622 - 18229707
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    ||||||||||| || | ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||    
T  18229622 tttaatgaaaaattgtttattgaatgtattggaaattgtaatagttaactttttaaaagaataattactaaatttgggatgcttaa 18229707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 13373974 - 13373861
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | ||||||||||  | ||||||||| |  ||| |||||||||||  |||||||| ||||| |||||||||||||||||    
T  13373974 ctctcatgccatctcatcaaa-tgtgccaactcatgaactgccacgt-gtactcggttagccaccatggcgtttttgttgacagaagctgacggcaagga 13373877  T
Q  227 cctttttcaaaaggtt 242  Q
    |  |||||||||||||    
T  13373876 ctattttcaaaaggtt 13373861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 40530455 - 40530530
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg 419  Q
    ||||||||| |||| ||||||||||| ||| |||||| | |||||| ||||||||||| |||||||||||||||||    
T  40530455 tttaatgaatagttgtgtattgaatgaattagaaattgtgatagttaactttttaaaataataattactaaatatg 40530530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 34899159 - 34899225
Alignment:
Q  347 aatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattacta 413  Q
    ||||||||||||| |||| |||||||| |||||| ||||| ||| ||||||||||||||||||||||    
T  34899159 aatgaaaagttatatattaaatgcattagaaattgtaataattgtctttttaaaagaataattacta 34899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 8208261 - 8208200
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||||||| ||||||||||  ||||| ||||| ||||||||||||||||||||||    
T  8208261 atgaaaagttatgtaatgaatgcattaaaaattgtaataattgactttttaaaagaataatt 8208200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 15720149 - 15720088
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    |||||||||| |||||| | | ||||||||||| ||||||||||||||||||||||||||||    
T  15720149 atgaaaagttgtgtattaagttcattggaaattgtaatagttgactttttaaaagaataatt 15720088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 17692348 - 17692263
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatat-ggatgcttaa 428  Q
    |||||||||||||| |||| | | ||||||| ||||| ||| |||||||||||||| |||||||||||||||| | ||||||||||    
T  17692348 tttaatgaaaagttgtgtagtaattgcattgaaaattgtaacagttgactttttaagagaataattactaaatttaggatgcttaa 17692263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 39558787 - 39558864
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatgga 421  Q
    |||| ||||||||  |||||  ||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||    
T  39558787 tttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagttgaatttttaaatgaataattactaaatatgga 39558864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 8221208 - 8221136
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| |||| || |||||||||||||||| || || |||||||||||||||||| ||||||||| ||||||    
T  8221208 tttaataaaaaattgtgtattgaatgcattgaaagttgtaatagttgactttttaagagaataattgctaaat 8221136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 9672352 - 9672410
Alignment:
Q  278 ttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    |||||||||| |||||||||| |||||||||||||| ||||| |||| |||||||||||    
T  9672352 ttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttatatatttaagcc 9672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 3140893 - 3140828
Alignment:
Q  351 aaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||| | |||| |||| |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  3140893 aaaagttgtatattaaatgaattgaaaattgtaatagttgactttttaaaagaataattattaaat 3140828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 112501 - 112576
Alignment:
Q  339 aaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    |||| ||||||||||| || |||||| ||| ||||| ||||| ||  ||||||||||| |||||||||||||||||    
T  112501 aaatttttaatgaaaaattgtgtattaaatacattgaaaattgtatcagttgacttttcaaaagaataattactaa 112576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 24041047 - 24041108
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataatt 409  Q
    ||||||||||||||||| |||| ||||||||||| | || |||| ||||| |||||||||||    
T  24041047 atgaaaagttatgtatttaatgtattggaaattaaactatttgaattttttaaagaataatt 24041108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 9671167 - 9671053
Alignment:
Q  127 ctctcatgccatctcatcaacgtttgccaactcagaacctgccacgtaggcctccgttagccaccaaagcgtttttattgacggaagctgacggcaagga 226  Q
    ||||||||||||||||||||  | ||||||||||  | |||||||||  || ||||||||||||||  |||||||  ||||| |||| ||||| ||| ||    
T  9671167 ctctcatgccatctcatcaaa-tgtgccaactcatgaactgccacgtgtgc-tccgttagccaccatggcgttttacttgacagaagttgacgacaaaga 9671070  T
Q  227 cctttttcaaaaggtta 243  Q
    |  ||||||||||||||    
T  9671069 ctattttcaaaaggtta 9671053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 13480112 - 13480032
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttga-ctttttaaaagaataattactaaat 416  Q
    |||||| |||||| |||  || |||||||||||||||| |||||||||||||| |  ||||| ||| ||||||||||||||    
T  13480112 ataaatttttaataaaatattgtgtattgaatgcattgaaaattataatagttaattttttttaaaaaataattactaaat 13480032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 41048072 - 41048000
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||  | || ||| ||||||||||||||||||||| || || |||||||| ||||||| ||||||    
T  41048072 tttaatgaaaaagtgtgcatttaatgcattggaaattataataattaaccttttaaaaaaataattgctaaat 41048000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 30332340 - 30332281
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagccat 338  Q
    ||||||||| |||||||||| | ||| || ||||| |||| |||||||||||||||||||    
T  30332340 tacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagccat 30332281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 35929581 - 35929523
Alignment:
Q  277 cttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagc 335  Q
    ||||||||||| ||||| |||||  | |||||||||||||||| ||||| |||||||||    
T  35929581 cttacagggacgaaaaccaaaatctcacgaacttacaaggaccttttacttatttaagc 35929523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 13375220 - 13375285
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggtta 243  Q
    ||||||||||||| |  |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||    
T  13375220 ctccgttagccacaatggcgtttttgttgacagaagctgacgacaatgaccattttccaaaggtta 13375285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 16308622 - 16308565
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||| ||||   |||||||||||| |||| |||||||||||||||||    
T  16308622 tacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcc 16308565  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 18963883 - 18963826
Alignment:
Q  359 tgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||||| ||||| |||||||| ||||||   |||||||||||||||||    
T  18963883 tgtatttaatgcattgaaaattgtaatagttaacttttctcaagaataattactaaat 18963826  T

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Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 27756787 - 27756844
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
    ||||||||| ||||||||||   |||||||||| | |||| |||||||||||||||||    
T  27756787 tacagggacgaaaacaaaaaacacgcgaacttagagggacgatttacatatttaagcc 27756844  T

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Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 28592134 - 28592081
Alignment:
Q  279 tacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatattta 332  Q
    ||||||||| |||| |||||   |||||||||||||||||| ||||||||||||    
T  28592134 tacagggacgaaaataaaaaacacgcgaacttacaaggaccttttacatattta 28592081  T

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Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 5815091 - 5815163
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||||||| | | | ||||||| |||||||||| |  ||||| | |||||||| |||||||||||||||    
T  5815091 tttaatgaaaagatgtatgttgaatgtattggaaattgtggtagttaaatttttaaatgaataattactaaat 5815163  T

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Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 23117247 - 23117318
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    ||||||||||| ||||||||| |||| |||||||||| |||| ||| || ||| |||||||||| | ||||||    
T  23117247 tttaatgaaaaattatgtattaaatgtattggaaattgtaattgttaac-tttaaaaagaataactgctaaat 23117318  T

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Target: scaffold0036 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 62545 - 62630
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg-gatgcttaa 428  Q
    |||||| |||| ||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  62545 tttaataaaaaattatgtattgaatgcattgaaaatcgtaatagttgactttttaaaagaataattactaaatatgagatgcttaa 62630  T

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Target: scaffold0517 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 5706 - 5602
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattttcgtttttgg 117  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||       || ||||||||||||| ||||| | |||||||    
T  5706 agaatagtgagaggaagaagatggacagtttggtttttaaaattcaaaatttgatttttacgttttttaatttcatccctatgtaaatttgcatttttgg 5607  T
Q  118 tttta 122  Q
    |||||    
T  5606 tttta 5602  T

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Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 6736 - 6847
Alignment:
Q  18 agaatagtgagaggaagaagatggaaagtttgatttttaaaattcaaaatttgatgtttacnnnnnnnaaattcatccctatgtcaattt-tcgtttttg 116  Q
    |||| ||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||       || ||||||||||||| ||||| |  ||||||    
T  6736 agaacagtgacaggaagaagatgaaaagtttggtttttaaaaatcaaaatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttg 6835  T
Q  117 gttttagtccct 128  Q
    ||||||||||||    
T  6836 gttttagtccct 6847  T

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Target: scaffold0419 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 1151 - 1081
Alignment:
Q  344 tttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaa 414  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  1151 tttaatgaaaaattttgtattgaatgcattggaaattataatagttgatttttcaaaagaataattactaa 1081  T

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Target: scaffold0119 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 1500 - 1419
Alignment:
Q  338 taaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaatatg 419  Q
    ||||| ||||||||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||||| ||||||||    
T  1500 taaatttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaataattattaaatatg 1419  T

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Target: scaffold0060 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 336
Target Start/End: Original strand, 13149 - 13310
Alignment:
Q  178 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatatagggtttgttttaga---acnnnnn 274  Q
    |||||||||||||||  |||||||| ||||| ||||||||||||||||||  ||||||||||||||  || ||| | ||||  |||||||   |          
T  13149 ctccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaagaagatacatggttcattttagaaagaaaaaaa 13248  T
Q  275 nncttacagggaccaaaacaaaaattgcgcgaacttacaaggaccatttacatatttaagcc 336  Q
      |||||||| || |||||||||| |||| ||||||||| ||||| ||||||||||||||||    
T  13249 aacttacaggaacgaaaacaaaaaatgcgtgaacttacagggaccttttacatatttaagcc 13310  T

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Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 103662 - 103741
Alignment:
Q  337 ataaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||| ||||||||||| || | |||||||||||||  ||||| ||||| | |||||||||||||||||||||||||||    
T  103662 ataaatttttaatgaaaaattgtatattgaatgcattaaaaattgtaatattcgactttttaaaagaataattactaaat 103741  T

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Target: scaffold0004 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 335863 - 335940
Alignment:
Q  339 aaatatttaatgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||| |||||||||||||| ||||| |||| ||||| ||||||||||| || |||||| ||| |||||||||||||||    
T  335863 aaatttttaatgaaaagttgtgtatcgaatacattgaaaattataataattaacttttgaaatgaataattactaaat 335940  T

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Target: scaffold1444 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 1728 - 1786
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    |||||||||| || ||| ||||||||||||||| ||||||||| |||||||||||||||    
T  1728 atgaaaagttgtgcattcaatgcattggaaattgtaatagttggctttttaaaagaata 1786  T

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Target: scaffold1444; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 956 - 1024
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaataattactaaat 416  Q
    |||||||| | |||||| ||| ||||| ||||| ||||||||||||||||||||||| |||| ||||||    
T  956 atgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaat 1024  T

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Target: scaffold0268 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 20272 - 20330
Alignment:
Q  348 atgaaaagttatgtattgaatgcattggaaattataatagttgactttttaaaagaata 406  Q
    |||||||||| |||||| |||||||| |||||| |||||||| ||||||||||||||||    
T  20272 atgaaaagttgtgtatttaatgcatttgaaattgtaatagttaactttttaaaagaata 20330  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 38187 - 38150
Alignment:
Q  369 gcattggaaattataatagttgactttttaaaagaata 406  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  38187 gcattagaaattgtaatagttgactttttaaaagaata 38150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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