View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_15 (Length: 445)
Name: NF8968_low_15
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 44 - 430
Target Start/End: Original strand, 24743661 - 24744045
Alignment:
| Q |
44 |
atggagctatcatatcctatcaagaatggtcagaaaccatcaaatcacagaaaaccaatcatgtgtatcaaacagatcctgaatcgaatttgcaaataat |
143 |
Q |
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| T |
24743661 |
atggagccatcatatcctatcaagaatggtcagaaaccttcaaatcaca--aaaccaatcatgtgtatcaaacagatcctgaatcaaatttgcaaataat |
24743758 |
T |
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| Q |
144 |
catttcacaacaagtacttattttaaggtaaccagtgaaagtcacatgctttaacatgtctgaaagattttattcaaagtttataaagaagggaaagggc |
243 |
Q |
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| T |
24743759 |
catttcacaacaagtacttattttaaggtaaccagtgaaagtcacatgctttaacatgtctgaaagattttattcaaagtttataaagaagggaaagggc |
24743858 |
T |
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| Q |
244 |
atgaatggaggaagcacttaagatggtggagttgggttcggcttaaacaaccctacattttttgttagacttgtataacacggaatcataagcttcaaaa |
343 |
Q |
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| T |
24743859 |
atgaatggaggaagcacttaagatggtggagttgggttcggcttaaagaaccctacattttttgttagacttgtataacacggaatcataagcttcaaaa |
24743958 |
T |
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| Q |
344 |
gacgaggtgaaggttgattgtcaacacttgccaacatcctgtccaaagctcgaccaactgcnnnnnnncgatctggtgtagcacaaa |
430 |
Q |
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| T |
24743959 |
gacgaggtgaaggttgattgtcaacacttgccaacatcctgtccaaagctcgaccaactgcaaaaaaacgatctggtgtaccacaaa |
24744045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 16332671 - 16332607
Alignment:
| Q |
326 |
gaatcataagcttcaaaagacgaggtgaaggttgattgtcaacacttgccaacatcctgtccaaa |
390 |
Q |
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| T |
16332671 |
gaattataagcttcaacaaacgaggtgaaggttgattatcaagacttgccaacatcatgtccaaa |
16332607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 16341795 - 16341736
Alignment:
| Q |
331 |
ataagcttcaaaagacgaggtgaaggttgattgtcaacacttgccaacatcctgtccaaa |
390 |
Q |
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| T |
16341795 |
ataagcttcaacaaacgaggtgaaggttgattctcaagacttgtcaacatcatgtccaaa |
16341736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 45160950 - 45160878
Alignment:
| Q |
325 |
ggaatcataagcttcaaaagacgaggtgaaggttgattgtcaacacttgccaacatcctgtccaaagctcgac |
397 |
Q |
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| T |
45160950 |
ggaattataaacttcaaaagacgaggtgtgggttgcttgtcaagactttcgaacatcatgtccaaaactcgac |
45160878 |
T |
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