View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_18 (Length: 410)
Name: NF8968_low_18
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 43476190 - 43476588
Alignment:
| Q |
1 |
tgtaagaaaactttggaaaacgtatatttgagataatacctcttcgagcaagaaaatgtggtattgggtcacatttgacatacaagatcaaagctagttt |
100 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476190 |
tgtaagaagactttggaaaacatatatttgagataatacctcttcgagcaagaaaatgtggtattgggtcacatttgacatacaagatcaaagctagttt |
43476289 |
T |
|
| Q |
101 |
gatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaacatctactcatgaccaagata |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476290 |
gatggatcggttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaacatctactcatgaccaagata |
43476389 |
T |
|
| Q |
201 |
agatgacctctatccgcactcttattgttgttgcatatgttcgtcaatggcatatttctcgtaatcatgggagaagtcaaaggggaaaaatgtctttcta |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476390 |
agatgacctctatccacactcttattgttgttgcatatgttcgtcaatggcacatttctcgtaatcatgggagaagtcaaaggggaaaaatgtctttcta |
43476489 |
T |
|
| Q |
301 |
aataaaccagcgaagatgttcgtcaatagtattctcctaatatagacccctttttaaatgataatcttccgagaaaagtttatatggtaccaacaccaaa |
400 |
Q |
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| T |
43476490 |
aat-aaccagcgaagatgtccgtcaatagtattctcctaatatagacacctttttaaatgataatcttccgagaaaagtttatatggtacctccaccaaa |
43476588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 47937613 - 47937437
Alignment:
| Q |
80 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
178 |
Q |
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||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
47937613 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcgctcaacagtatggtatggattatgaagaa |
47937514 |
T |
|
| Q |
179 |
acatctactcatgaccaagataagatgacctctatccgcactcttattgttgttgcatatgttcgtcaatggcatatttc |
258 |
Q |
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| T |
47937513 |
acatttgctc---ccgttgcaaaaatgaccactatccgcactcttattgctgttgcatctatacgtcagtggcatatttc |
47937437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 47631116 - 47631013
Alignment:
| Q |
80 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
178 |
Q |
| |
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||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| |||| | |||||| ||| ||||||||||||||||| |
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| T |
47631116 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattttctcaacagtatggtatggattatgaagaa |
47631017 |
T |
|
| Q |
179 |
acat |
182 |
Q |
| |
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|||| |
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|
| T |
47631016 |
acat |
47631013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 10052795 - 10052692
Alignment:
| Q |
80 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
178 |
Q |
| |
|
||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
10052795 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcgctcaacagtatggtatggattatgaagaa |
10052696 |
T |
|
| Q |
179 |
acat |
182 |
Q |
| |
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|||| |
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|
| T |
10052695 |
acat |
10052692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 46821071 - 46821174
Alignment:
| Q |
80 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
178 |
Q |
| |
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||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
46821071 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcactcaacagtatggtatggattatgaagaa |
46821170 |
T |
|
| Q |
179 |
acat |
182 |
Q |
| |
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|||| |
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| T |
46821171 |
acat |
46821174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 9878727 - 9878643
Alignment:
| Q |
96 |
agtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
180 |
Q |
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|||||||||| || ||||| | |||||||||||||||||||||||| ||| | |||||| ||| || | |||||||||||||| |
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| T |
9878727 |
agtttgatgggtctgttgagcgttacaaagctcgtcttgtggctaaaggatattctcaacaatatggtttagattatgaagaaac |
9878643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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