View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_21 (Length: 393)
Name: NF8968_low_21
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 37588245 - 37588441
Alignment:
| Q |
17 |
agaagttcaagaggaatctaaaattttgggaggatgagatgtttaaaagtggcctttcctctcttgagagtggtataggagcaatttgctaggtgtagag |
116 |
Q |
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| T |
37588245 |
agaagttcaagaggaatctaaaattttgggaggataagatgtttaaaagtggcctttcctctcttgagagtggtttaggagcaatttgctaggcgtagag |
37588344 |
T |
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| Q |
117 |
ggataaagctcaattacagtatcaatggatgaaatataatagtttttagaatgctttagagtatacttcatgaaccaatgaaatcaagacaaccaat |
213 |
Q |
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| T |
37588345 |
ggataaagctcaattacagtatcaatggatgaaatataatagtttttagaatgctttagagtatacttcatgaaccaatgaaatcaagacaaccaat |
37588441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 233 - 388
Target Start/End: Original strand, 37588438 - 37588593
Alignment:
| Q |
233 |
caatagtgaattcaatcatcaaatatagaaataaacagtaaaacagatatggatgttgattcatcaacttgcatcctttgttgtttcaccaaacactgca |
332 |
Q |
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| T |
37588438 |
caatagtgaattcaatcatcaaatatagaaataaacagtaaaacagatatggatgttgattcatcaacttgcatcctttgttgtttcaccaaacactgca |
37588537 |
T |
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| Q |
333 |
aatcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacct |
388 |
Q |
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| T |
37588538 |
aatcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacct |
37588593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 37465636 - 37465578
Alignment:
| Q |
330 |
gcaaatcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacct |
388 |
Q |
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| T |
37465636 |
gcaaatcgcaaacttcctacgcgttaatggctgcctgtaattgttcaaggcttttacct |
37465578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 388
Target Start/End: Original strand, 11500903 - 11501000
Alignment:
| Q |
293 |
tcatcaacttgcatcctttgttgtttcaccaaacact--gcaaatcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacct |
388 |
Q |
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| T |
11500903 |
tcatcaactttcatcctttgttcttccaacaaacactatgcaaatcacaaacatcctacgcgttaatggctgcctgcaattgtttaaggcttttacct |
11501000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 37582212 - 37582295
Alignment:
| Q |
306 |
tcctttgttgtttcaccaaacactgcaaa-tcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacct |
388 |
Q |
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| T |
37582212 |
tcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaaggcttttacct |
37582295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 6776566 - 6776623
Alignment:
| Q |
331 |
caaatcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacct |
388 |
Q |
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| T |
6776566 |
caaaccgcagacttcctacgcgttaatggctgcctgtaattgttcaaggcttttacct |
6776623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 37486686 - 37486644
Alignment:
| Q |
183 |
ttcatgaaccaatgaaatcaagacaaccaatgtgaattataaa |
225 |
Q |
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| T |
37486686 |
ttcatgaattaatgacatcaagacaaccaatgtgaattataaa |
37486644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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