View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_24 (Length: 346)
Name: NF8968_low_24
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 49466963 - 49466803
Alignment:
| Q |
1 |
ggatcagaagttggtgattataagattgtactctaattgggaaggtaattaaaatcagaccggatattaaatcgatgtaggcatccttgcaatgcttgaa |
100 |
Q |
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| T |
49466963 |
ggatcagaagttggtgattataagattgtactctaattgggaaggtaattaaaatcagaccggatattaaatcgatgtaggtatccttgcaatgcttgaa |
49466864 |
T |
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| Q |
101 |
agtattaaggctagggtctaactgtggtctaatcggtagtaatcaaatatacatattgtta |
161 |
Q |
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| T |
49466863 |
agtattgaggctagggtctaactgtggtctaatcggtagtaatcaaatatacatattgtta |
49466803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 328
Target Start/End: Complemental strand, 49466737 - 49466636
Alignment:
| Q |
228 |
atatgtttcaacattctttttatatacgaaaagaaatctttaagttgaacttt-cccgnnnnnnnngtgttaacctttcatttcaaggaaaaggacctca |
326 |
Q |
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| T |
49466737 |
atatgtttcaacattctttttatatacaaaaagaaatctttaagttgaactttccccgttttttttgtgttaacctttcatttcaaggtaaaggacctca |
49466638 |
T |
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| Q |
327 |
ac |
328 |
Q |
| |
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|| |
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| T |
49466637 |
ac |
49466636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 33027428 - 33027388
Alignment:
| Q |
44 |
ggtaattaaaatcagaccggatattaaatcgatgtaggcat |
84 |
Q |
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| T |
33027428 |
ggtaatcaaaatcagaccgaatattaaatcgatgtaggcat |
33027388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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