View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_29 (Length: 286)
Name: NF8968_low_29
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 35523974 - 35523717
Alignment:
| Q |
16 |
ttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagacnnnnnnnnctaaatttcttttgtgtgtgaactctcag |
115 |
Q |
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| T |
35523974 |
ttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtatgtgagagacaaaaaaaattaaatttcttttgtgtgtgaactctcac |
35523875 |
T |
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| Q |
116 |
ccaaaagaaggacgtattgggtgagagttcacctaagaatttctcatagatagtgtgacaaagtaagaggttgtgagtgttaacctgtgtggagaagaag |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35523874 |
ccaaaagaagaacgtattgggtgagagttcacctaagaatttctcatagatagtgtgacaaagaaagaggttgtgagtgttaacctgtgtggagaagaag |
35523775 |
T |
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| Q |
216 |
tgacggcaaagtcctcccaacggttttcacgacggtgccatttgatgatgtgtccatc |
273 |
Q |
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||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
35523774 |
tgacggcaaagtcctcccaacggttttgatgatggtgccatttgatgatgtgtccatc |
35523717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 35518208 - 35518120
Alignment:
| Q |
184 |
ggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttcacgacggtgccatttgatgatgtgtccat |
272 |
Q |
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| T |
35518208 |
ggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgtgtccat |
35518120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 43359132 - 43359083
Alignment:
| Q |
28 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
77 |
Q |
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| T |
43359132 |
ttttctccatacacacaatgtatcaccctcatgtgagagtgtgtgagaga |
43359083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 37025637 - 37025665
Alignment:
| Q |
132 |
ttgggtgagagttcacctaagaatttctc |
160 |
Q |
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| T |
37025637 |
ttgggtgagagttcacctaagaatttctc |
37025665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 15066041 - 15066092
Alignment:
| Q |
27 |
cttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
78 |
Q |
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| T |
15066041 |
cttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagac |
15066092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 34311235 - 34311285
Alignment:
| Q |
28 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
78 |
Q |
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| T |
34311235 |
ttttctccatacacataatgtaccaccctcacgtgagagtgcgtgagagac |
34311285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 46135685 - 46135636
Alignment:
| Q |
28 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
77 |
Q |
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||||||||||||||||| ||||||| || ||| |||||||||||||||| |
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| T |
46135685 |
ttttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga |
46135636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 23045331 - 23045359
Alignment:
| Q |
132 |
ttgggtgagagttcacctaagaatttctc |
160 |
Q |
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| T |
23045331 |
ttgggtgagagttcacctaagaatttctc |
23045359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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