View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_30 (Length: 244)
Name: NF8968_low_30
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 34140418 - 34140342
Alignment:
| Q |
60 |
tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta |
136 |
Q |
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| T |
34140418 |
tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta |
34140342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34141009 - 34140950
Alignment:
| Q |
1 |
ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt |
60 |
Q |
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| T |
34141009 |
ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt |
34140950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 40333025 - 40333079
Alignment:
| Q |
142 |
ctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg |
196 |
Q |
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| T |
40333025 |
ctgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttg |
40333079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34133435 - 34133376
Alignment:
| Q |
1 |
ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
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| T |
34133435 |
ttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggtt |
34133376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34137346 - 34137287
Alignment:
| Q |
1 |
ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt |
60 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
34137346 |
ttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggtt |
34137287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34127162 - 34127115
Alignment:
| Q |
1 |
ttgctcagagtttggaggagaagaagaaggttgctagagatgagatca |
48 |
Q |
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||||||| |||||||||||||| | ||||||||| ||||||||||||| |
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| T |
34127162 |
ttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatca |
34127115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 48583989 - 48583945
Alignment:
| Q |
138 |
agcgctgctatacagcaagacaaagtcagcacacgagagccacac |
182 |
Q |
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| T |
48583989 |
agcgctgctatacagcacgacaaaatcaacacacgaaagccacac |
48583945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 13066886 - 13066797
Alignment:
| Q |
136 |
agagcgctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttgctgtattattagttttctttcagtttattg |
226 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
13066886 |
agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttgttgtattattag-tttctttcagtttattg |
13066797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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