View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_36 (Length: 227)
Name: NF8968_low_36
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 26131246 - 26131055
Alignment:
| Q |
22 |
ttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcatc |
121 |
Q |
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| T |
26131246 |
ttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgcagcccatcacagattgtgtgcttggcatctgttaaagaatgcatc |
26131147 |
T |
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| Q |
122 |
aaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagggttgtggtctg |
213 |
Q |
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| T |
26131146 |
aaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagagttgtggtctg |
26131055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 35242009 - 35241829
Alignment:
| Q |
21 |
gttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcat |
120 |
Q |
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| T |
35242009 |
gttataacagatggagaccttgcaatgaaaaatgccattaaaaaggtttttcctgcagcgcaccacaggttgtgtgcttggcatctgttaaggaatgctt |
35241910 |
T |
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| Q |
121 |
caaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaag |
201 |
Q |
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| T |
35241909 |
gcaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgctgactgacattgagattaacaaatttgaag |
35241829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 11010347 - 11010526
Alignment:
| Q |
21 |
gttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcat |
120 |
Q |
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|||||||| ||||| ||||||||||||||| || |||||| ||| | || ||| | || || ||||| |||||||| ||||||||||||| |||||| | |
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| T |
11010347 |
gttataacagatggcgaccttgcaatgaaaaatgccattaaaaaggtttttcctacagcgcaccacaggttgtgtgcctggcatctgttaaggaatgctt |
11010446 |
T |
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| Q |
121 |
caaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaa |
200 |
Q |
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| T |
11010447 |
ccaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgttgggtgacattgagattaacaaatttgaa |
11010526 |
T |
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