View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_4 (Length: 669)
Name: NF8968_low_4
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 242 - 659
Target Start/End: Complemental strand, 34851203 - 34850786
Alignment:
| Q |
242 |
tttaaaagaattacctgttgctccaagatttttgcttctcacttcttgagttcttgatcctctcccctcaaccttatnnnnnnnngttaaggtgattaat |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34851203 |
tttaaaagaattacctgttgctccaagatttttgcttcccacttcttgagttcttgatcctctcccctcaaccttataaaaaaaagttaaggtgattaat |
34851104 |
T |
|
| Q |
342 |
aatatgctgtatatatgtgcgtttttggtaccatatttgagcttatggaaataacggcaaaaacacattgaaaaacataaacgtacttttgtgtcttgca |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
34851103 |
aatatgctgtatatatgtgcgtttttggtaccatatttgagcttatggaaataacggccaaaacacattgaaaaacataaacgtgcttttgtgtgttgca |
34851004 |
T |
|
| Q |
442 |
aacggaaaaccaaacacacactaaaattaatgtctgatttctggctcatatcgaactagttagatcagtccagatttttaaatatttaagacataacttg |
541 |
Q |
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|| | ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
34851003 |
aatgaaaaaccaaacacacactaaaattaatgtctggtttctagttcatatcgaactagttaggtcagtctagatttttaaatatttaagacataacttg |
34850904 |
T |
|
| Q |
542 |
tacaaaaactagatagataaaggactccaacaaaagaatataaataccaacttaccttaaaatgacaaaacatgtatttactattgccgtcatatatcag |
641 |
Q |
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| T |
34850903 |
tacaaaaactagatagataaaggactccaacaaaagaatataaataccaacttaccttaaaatgacaaaacatgtatttactattgccgtcatatatcag |
34850804 |
T |
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| Q |
642 |
atgagtttagcatgatgt |
659 |
Q |
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| T |
34850803 |
acgagtttagcatgatgt |
34850786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 34851423 - 34851243
Alignment:
| Q |
1 |
aataattttcttgaccaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34851423 |
aataattttcttgaccaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtatttttgttataagagat |
34851324 |
T |
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| Q |
101 |
gccatcactaggagtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagtagtagtc |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34851323 |
gccatcactaggagtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagcagtagtc |
34851243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 3652164 - 3652321
Alignment:
| Q |
14 |
accaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactagga |
113 |
Q |
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||||||||||| ||||||||||||| ||||| | ||||||| |||||||||||||||| ||||| | || | || || | ||||||| |||||| | |
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| T |
3652164 |
accaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtactattagtattcttgttagagatg---tcactatta |
3652260 |
T |
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| Q |
114 |
gtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagt |
174 |
Q |
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| ||| |||||||| |||||||||| |||||||||| || |||| || | || |||||||| |
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| T |
3652261 |
ggagttcctaaaacaaatccaaacagaaacattacttaagaaatacatacatgtttaaagt |
3652321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 3652473 - 3652540
Alignment:
| Q |
250 |
aattacctgttgctccaagatttttgcttctcacttcttgagttcttgatcctctcccctcaacctta |
317 |
Q |
| |
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||||||||| |||| ||||| ||||||||| ||||||| ||||||||||||| |||||||||||||| |
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| T |
3652473 |
aattacctggtgcttcaagacttttgcttcctacttcttcagttcttgatcctttcccctcaacctta |
3652540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 31781147 - 31781102
Alignment:
| Q |
419 |
taaacgtacttttgtgtcttgcaaacggaaaaccaaacacacacta |
464 |
Q |
| |
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| T |
31781147 |
taaacgtgcttttgtgtgttacaaacgggaaaccaaacacacacta |
31781102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 9607634 - 9607559
Alignment:
| Q |
390 |
aaataacggcaaaaacacattgaaaaacat--aaacgtacttttgtgtcttgcaaacggaaaaccaaacacacact |
463 |
Q |
| |
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|||| ||||||||||||| |||| |||||| |||||| ||||||||| | |||||||| |||||||||||||||| |
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| T |
9607634 |
aaattacggcaaaaacacgttgagaaacatgcaaacgtgcttttgtgtgtcgcaaacgggaaaccaaacacacact |
9607559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 460
Target Start/End: Original strand, 32312883 - 32312965
Alignment:
| Q |
380 |
gagcttatggaaataacggcaaaaacacattgaaaaacat--aaacgtacttttgtgtcttgcaaacggaaaaccaaacacac |
460 |
Q |
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|||||| ||||||| ||||||||||||||||| ||| ||| |||| | ||||||| | |||| ||||| ||||||||||||| |
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| T |
32312883 |
gagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac |
32312965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 31120837 - 31120764
Alignment:
| Q |
2 |
ataattttcttgaccaccatagtagattgaagagctgtagta---gctaggttccattgtctcattctgataat |
72 |
Q |
| |
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||||||||||||||||||||| |||||||| || |||||||| || || |||| ||||||||||||||||| |
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| T |
31120837 |
ataattttcttgaccaccataatagattgaggaactgtagtaattactgggctccactgtctcattctgataat |
31120764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 10201477 - 10201509
Alignment:
| Q |
428 |
ttttgtgtcttgcaaacggaaaaccaaacacac |
460 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
10201477 |
ttttgtgtgttgcaaacggaaaaccaaacacac |
10201509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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