View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8968_low_7 (Length: 562)
Name: NF8968_low_7
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_7 |
 | |
|
| [»] scaffold0155 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 12081461 - 12082012
Alignment:
| Q |
1 |
aaaattaaaattaccatctctcaataaatcataacacaattttttgtttcaactacgagttgtcggaaatacaaatatagtctgttgtccataaaaactg |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
12081461 |
aaaactaaaattatcatctctcaataaatcataacacaattttttgtttcaactacgggttgtcggaaatacaaaaatagtctgttatccataaaaactg |
12081560 |
T |
|
| Q |
101 |
tataagatcaaatattgttcaatatcatataagtttatcatgtattgttctgccttatcttttgtgttgtttgatattgatctccaattttactcttcaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12081561 |
tataagatcacatattgttcaatatcatataagtttatcatgtattattctgccttatcttttgtgttgtttgatattgatctccaattttactcttcaa |
12081660 |
T |
|
| Q |
201 |
atgggttcaataattgttagggtccagtgtatagaggaatgtctagccaaagacaattgatacaagcaattgccaaagtttcaactatgcattaaatgca |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12081661 |
atgggttcaataattgttagggcccagtgtatagaggaatgtctagccaaagacaattgatacagccaattgccaaagtttcaactatgcattaaatgca |
12081760 |
T |
|
| Q |
301 |
tgatgtaaaatcttcttcta-ag------aatgttgtaacttgcgggttgatatctttgaaaagcaaatgtgatgcagatttcacatttgacttgcaaga |
393 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12081761 |
tgatgtaaaatcttcttctacagcgaggctatgctgtagcttgcgggttgatatctttgaaaagcaaatgtgatgcagatttcacatttgccttgcaaga |
12081860 |
T |
|
| Q |
394 |
tcatttgacaaaggagaattgaattcagattaccacatttcatatataaatagaggccttggcatgtgaagaaaattatccaaagctcaaagaaaataca |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12081861 |
tcatttgacaaaggagaattgaattcagattaccacatttcatatataaatagaagccttggcatgtgaagaaaattatccaaagctcaaagaaaataca |
12081960 |
T |
|
| Q |
494 |
aagctttagtattgaagcataagtgaaaatacaaagtttttgtgtgtagaagt |
546 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
12081961 |
aagctttagtattgaagcataagtgaagatacaaagttttt-tgtgtagaagt |
12082012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 174 - 546
Target Start/End: Original strand, 12098650 - 12099000
Alignment:
| Q |
174 |
atattgatctccaattttactcttcaaatgggttcaataattgttagggtccagtgtatagaggaatgtctagccaaagacaattgatacaagcaattgc |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| | | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
12098650 |
atattgatctccaattatactcttcaaatgggttcaataatttgtaggacccactgtaaggtgaaatgtctagccaaagacaat---tacaagcaattgc |
12098746 |
T |
|
| Q |
274 |
caaagtttcaactatgcattaaatgcatgatgtaaaatcttcttctaaga----atgttgtaacttgcgg-gttgatatctttgaaaagcaaatgtgatg |
368 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | || |||||||| | || || |||||||| ||||||||| |||||||||| |
|
|
| T |
12098747 |
caaagtttcagct---------atgcatgatgtaaaatcttctacagtgaggctatgttgtagcatgtggtgttgatatttttgaaaagtaaatgtgatg |
12098837 |
T |
|
| Q |
369 |
cagatttcacatttgacttgcaagatcatttgacaaaggagaattgaattcagattaccacatttcatatataaatagaggccttggcatgtgaagaaaa |
468 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||| ||||||||||| |
|
|
| T |
12098838 |
catatttcacatttggcttgcagtatcatttgataaaagagaattgaattcacattacca-ttaccataagcaaa--------------tgtgaagaaaa |
12098922 |
T |
|
| Q |
469 |
ttatccaaagctcaaagaaaatacaaagctttagtattgaagcataagtgaaaatacaaagtttttgtgtgtagaagt |
546 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
12098923 |
taatccgaagctcaaagaaaatacaaagctcgggtattgaagtagaagtgaaactacaaagtttttgtgtgtagaagt |
12099000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 2757620 - 2757571
Alignment:
| Q |
396 |
atttgacaaaggagaattgaattcagattaccacatttcatatataaata |
445 |
Q |
| |
|
||||||||||| || |||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
2757620 |
atttgacaaagaagcattgaattcacattgccacatttcatttataaata |
2757571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 2762171 - 2762122
Alignment:
| Q |
396 |
atttgacaaaggagaattgaattcagattaccacatttcatatataaata |
445 |
Q |
| |
|
||||||||||| || |||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
2762171 |
atttgacaaagaagcattgaattcacattgccacatttcatttataaata |
2762122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 2757742 - 2757701
Alignment:
| Q |
246 |
gccaaagacaattgatacaagcaattgccaaagtttcaactatg |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2757742 |
gccaaagacaattgatacaagc--ttgccaaagtttctactatg |
2757701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 2762293 - 2762252
Alignment:
| Q |
246 |
gccaaagacaattgatacaagcaattgccaaagtttcaactatg |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2762293 |
gccaaagacaattgatacaagc--ttgccaaagtttctactatg |
2762252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 42073013 - 42073069
Alignment:
| Q |
19 |
tctcaataaatcataacacaattttttgtttcaactacgagttgtcggaaatacaaa |
75 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
42073013 |
tctcattaaattatagcacaattttttgtttcaaatacaagttgtctaaaatacaaa |
42073069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 239 - 540
Target Start/End: Original strand, 12930357 - 12930665
Alignment:
| Q |
239 |
atgtctagccaaagacaattgatacaagcaattgccaaagtttcaactatgcattaaatgcatgatgtaaaatcttcttctaa---ga----atgttgta |
331 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
12930357 |
atgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgtatgatgtaaaatcttcttctacagtgaggctatgttgta |
12930456 |
T |
|
| Q |
332 |
acttgcgg-gttgatatctttgaaaagcaaatgtgatgcagatttcacatttgacttgcaagatcatttgacaaaggagaattgaattcagattaccaca |
430 |
Q |
| |
|
||||||| | |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
12930457 |
gcttgcggtgctgatatctttgaaaagtaaatgtgatgcagatttcacatttggcttgtagtatcatttgacaaaggagaattgaattcacatagccaca |
12930556 |
T |
|
| Q |
431 |
tttcatatataaatagaggccttggcatgtgaagaaaattatccaaagctcaaagaaaatacaaagctttagtattgaagcataagtgaaaatacaaagt |
530 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
12930557 |
tttcatgtataaatagaggccttggcatgtgaagaaaatcatccgaagctcaaagaaaatac-aagcttcagtattgaagcagaagtgaaaatacaaagc |
12930655 |
T |
|
| Q |
531 |
ttttgtgtgt |
540 |
Q |
| |
|
|| ||||||| |
|
|
| T |
12930656 |
ttctgtgtgt |
12930665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 239 - 540
Target Start/End: Original strand, 12935103 - 12935411
Alignment:
| Q |
239 |
atgtctagccaaagacaattgatacaagcaattgccaaagtttcaactatgcattaaatgcatgatgtaaaatcttcttctaa---ga----atgttgta |
331 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
12935103 |
atgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgtatgatgtaaaatcttcttctatagtgaggctatgttgta |
12935202 |
T |
|
| Q |
332 |
acttgcgg-gttgatatctttgaaaagcaaatgtgatgcagatttcacatttgacttgcaagatcatttgacaaaggagaattgaattcagattaccaca |
430 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
12935203 |
gcttgcggtgctgatatctttgaaaactaaatgtgatgcagatttcacatttggcttgcagtatcatttgacaaaggagaattgaattcacatagccaca |
12935302 |
T |
|
| Q |
431 |
tttcatatataaatagaggccttggcatgtgaagaaaattatccaaagctcaaagaaaatacaaagctttagtattgaagcataagtgaaaatacaaagt |
530 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
12935303 |
tttcatgtataaatagaggccttggcatgtgaagaaaatcatccgaagctcaaagaaaatac-aagcttcagtattgaagcagaagtgaaaatacaaagc |
12935401 |
T |
|
| Q |
531 |
ttttgtgtgt |
540 |
Q |
| |
|
|| ||||||| |
|
|
| T |
12935402 |
ttctgtgtgt |
12935411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 34858134 - 34858203
Alignment:
| Q |
248 |
caaagacaattgatacaagcaattgccaaagtttcaactatgcattaaatgcatgatgt-aaaatcttct |
316 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| || ||||||||||||||||| || |||||||||| |
|
|
| T |
34858134 |
caaagacaattgcaacaaggaactgccaaagtttctacaatgcattaaatgcatgaggtgaaaatcttct |
34858203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 239 - 546
Target Start/End: Original strand, 11104152 - 11104466
Alignment:
| Q |
239 |
atgtctagccaaagacaattgatacaagcaattgccaaagtttcaactatgcattaaatgcatgatgtaaaatcttcttctaa---ga----atgttgta |
331 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
11104152 |
atgtccagccaaagacaattgctacaagcaattgccaaagtttcaactatgcagtaaatgcatgatgtaaaatcttcttctacagtgaggctatgttgta |
11104251 |
T |
|
| Q |
332 |
acttgcgg-gttgatatctttgaaaagcaaatgtgatgcagatttcacatttgacttgcaagatcatttgacaaaggagaattgaattcagattaccaca |
430 |
Q |
| |
|
||||||| | ||||||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11104252 |
gcttgcggtgctgatatctttgaaaattaaatgtcatgcagatttcacatttggcttgctgtatcatttgacaaaggagaattgaattcacatagccaca |
11104351 |
T |
|
| Q |
431 |
tttcatatataaatagaggccttggcatgtgaagaaaattatccaaagctcaaagaaaatacaaagctttagtattgaagcataagtgaaaatacaaagt |
530 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||| |||| |||||||||| |
|
|
| T |
11104352 |
tttcatgtataaatataggccttggcatgtgaagaaaatcaaccaaagctcaaagaaaatacaaagcttcaacattgaagcagaagt-caaatacaaagc |
11104450 |
T |
|
| Q |
531 |
ttttgtgtgtagaagt |
546 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
11104451 |
ttctatgtgtagaagt |
11104466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 49495622 - 49495565
Alignment:
| Q |
101 |
tataagatcaaatattgttcaatatcatataagtttatcatgtattgttctgccttat |
158 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||| | |||| ||||||| |||||| |
|
|
| T |
49495622 |
tataagataaaaaattgttcaatatcataaaagtttgttatgtgttgttctaccttat |
49495565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 540
Target Start/End: Original strand, 34907051 - 34907128
Alignment:
| Q |
462 |
aagaaaattatccaaagctcaaagaaaatacaaagctttagtattgaagcataagtgaaaatacaaagtttttgtgtgt |
540 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
34907051 |
aagaaaatcatccgaagctcaaagaaaatacaa-gcttcagtattgaagcagaagtgaaaatacaaagcttctgtgtgt |
34907128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 47242643 - 47242741
Alignment:
| Q |
58 |
agttgtcggaaatacaaatatagtctgttgtccataaaaactgtataagatcaaatattgttcaatatcatataagtttatcatgtattgttctgcctt |
156 |
Q |
| |
|
||||||| |||||| || ||||||| |||| |||||||| |||||||||||||| ||| ||||||||| || | |||| |||||| | |||||||||| |
|
|
| T |
47242643 |
agttgtctaaaataccaaaatagtcttttgtacataaaaattgtataagatcaaaaattattcaatatcgtaaatgtttgtcatgtgtcgttctgcctt |
47242741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 540
Target Start/End: Original strand, 51302028 - 51302150
Alignment:
| Q |
416 |
attcagattaccacatttcatatataaatagaggccttggcatgtgaagaaaattatccaaagctcaaagaaaatacaaagctttagtattgaagcataa |
515 |
Q |
| |
|
||||| ||| || |||||||| ||||||||||||| || || ||||| |||| ||| ||||| |||| ||||||||||||| || || |||||||| |
|
|
| T |
51302028 |
attcacatttcctcatttcatctataaatagaggcaatgtca-atgaaggaaatcatctgaagcttaaag-aaatacaaagcttcagcatcaaagcataa |
51302125 |
T |
|
| Q |
516 |
gtgaaaatacaaagtttttgtgtgt |
540 |
Q |
| |
|
|||||||||||||| || ||||||| |
|
|
| T |
51302126 |
gtgaaaatacaaagcttctgtgtgt |
51302150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 41538150 - 41538222
Alignment:
| Q |
72 |
caaatatagtctgttgtccataaaaact-gtataagatcaaatattgttcaatatcatataagtttatcatgt |
143 |
Q |
| |
|
|||| ||||| | ||||||||||||| | |||||| |||||| || |||||||||||| ||||||||||||| |
|
|
| T |
41538150 |
caaaaatagtattttgtccataaaaaatcgtataaaatcaaaaatcattcaatatcataaaagtttatcatgt |
41538222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 42013506 - 42013459
Alignment:
| Q |
104 |
aagatcaaatattgttcaatatcatataagtttatcatgtattgttct |
151 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
42013506 |
aagaccaaaaattgttcaatatcataaaagtttatcatctattgttct |
42013459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 33612 - 33685
Alignment:
| Q |
67 |
aaatacaaatatagtctgttgtccataaaaact-gtataagatcaaatattgttcaatatcatataagtttatc |
139 |
Q |
| |
|
|||||| || |||| || |||||||| |||||| |||||||| |||| ||| |||||||||||| ||||||||| |
|
|
| T |
33612 |
aaataccaaaataggcttttgtccatcaaaacttgtataagaccaaaaattattcaatatcataaaagtttatc |
33685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 27824786 - 27824835
Alignment:
| Q |
101 |
tataagatcaaatattgttcaatatcatataagtttatcatgtattgttc |
150 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| |||||| ||||||||||||| |
|
|
| T |
27824786 |
tataagatcaaaaattattcaataccataaaagtttgtcatgtattgttc |
27824835 |
T |
|
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