View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8968_low_9 (Length: 557)
Name: NF8968_low_9
Description: NF8968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8968_low_9 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 30 - 541
Target Start/End: Original strand, 31094892 - 31095402
Alignment:
| Q |
30 |
agcacaaatagagagatcgcgtcggacgaggaagaagatgcagcaacgacggggttacaaatggcagccaaaagcagcgaccgtagggaatattaacgct |
129 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
31094892 |
agcacaaatagagagatgacgtcgtacgaggaagaagatgcagcaatgacggggttacaaatggcagccaaaagcagcgaccgcatggaatattaacgct |
31094991 |
T |
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| Q |
130 |
ctataaggtggagacaacattggggttatgtcacagaagtcgacgatccttttaatattggtgatcttcttaaatgcatatgtattcaacaaacatcaaa |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31094992 |
ctataaggtggagacagcattggggttatgtcacagaagccgacgatccttttaatattggtgatcttcttaaatgcatatgtattcaacaaacatcaaa |
31095091 |
T |
|
| Q |
230 |
gacctagcaggaatagaggaactgtcaccactcatatagttgacaagagcttcttggagcatgtggttgagatatgagatgcaagaacttgtattcnnnn |
329 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31095092 |
gacctagcaggaatagaggaactgtcaccactgatatagttgacaagagcttcttggagcatgtggttgagatatgagatgcaagaacttgtattc-ttt |
31095190 |
T |
|
| Q |
330 |
nnngtcctatctaaggtaggtttggcaaaattctgacattacctcttgggccacaaattcatcgtccggactgatgagaagagtctgaaggcacttacgg |
429 |
Q |
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|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31095191 |
tttgttctatctaagttaggtttggcaaaattctgacattacatcttgggccacaaattcatcgtccggactgatgagaagagtctgaaggcacttacgg |
31095290 |
T |
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| Q |
430 |
acaaaactactcaaacacctgcgcaccaaaggtggcttcacatgttccctggctttgattttgtgattgaatataaacccgacagcgacaatatagcatc |
529 |
Q |
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| T |
31095291 |
acaaaactactcaaacacctgcgcaacaaaggtggcttcacatgttacctggctttgattttgtgattgaatataaacccgacagagacaatatagcatc |
31095390 |
T |
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| Q |
530 |
tgattatgtatc |
541 |
Q |
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|||| |||||| |
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| T |
31095391 |
cgattctgtatc |
31095402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 31050429 - 31050259
Alignment:
| Q |
30 |
agcacaaatagagagatcgcgtcggacgaggaagaagatgcagcaacgacggggttacaaatg-----gcagccaaaagcagcgaccgtagggaatatta |
124 |
Q |
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||||||||||||||||| |||||| ||||| || |||||||| |||||||||||||||||| ||||| | |||||||||||| | || |||||| |
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| T |
31050429 |
agcacaaatagagagatggcgtcgtacgagttggaggatgcagcgacgacggggttacaaatgcagtagcagctagaagcagcgaccgcatgggatatta |
31050330 |
T |
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| Q |
125 |
acgctctataaggtggagacaacattggggttatgtcacagaagtcgacgatccttttaatattggtgatc |
195 |
Q |
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| T |
31050329 |
acgccctataaggtggagacaacattggggctatgtcacagaagccgacgatccttttaatattggtgatc |
31050259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 31108003 - 31107940
Alignment:
| Q |
209 |
atgtattcaacaaacatcaaagacctagcaggaatagaggaactgtcaccactcatatagttga |
272 |
Q |
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| T |
31108003 |
atgtattcaacaaacatcaaagacctagcagaaatcatgaaactatcaccactcatatagttga |
31107940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 31042703 - 31042649
Alignment:
| Q |
218 |
acaaacatcaaagacctagcaggaatagaggaactgtcaccactcatatagttga |
272 |
Q |
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| T |
31042703 |
acaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttga |
31042649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 506
Target Start/End: Original strand, 3608 - 4092
Alignment:
| Q |
30 |
agcacaaatagagagatcgcgtcggacgaggaagaagatgcagcaacgacggggttacaaatg-----gcagccaaaagcagcgaccgtagggaatatta |
124 |
Q |
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||||||||| ||||||| | |||| | |||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||| ||| ||||| |
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| T |
3608 |
agcacaaatggagagatggtgtcgtatgaggaagaggatgcagcgacgacggggttacaaatgcggtagcagccagaagcagcgaccgcggggggtatta |
3707 |
T |
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| Q |
125 |
acgctctataaggtggagacaacattggggttatgtcacagaagtcgacgatccttttaatattggtgatcttcttaaatgcatatgtattcaacaaaca |
224 |
Q |
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|||| |||||||||||||||||||||| || ||| | |||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||| || |
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| T |
3708 |
acgccctataaggtggagacaacattgaggcagtgttgtaaaagtcgacaatccttttaatattggtaatcctcttaaatatatatgtattcaacaagca |
3807 |
T |
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| Q |
225 |
tcaaagacctagcaggaatagaggaactgtcaccactcatatagttgacaagagcttcttggagcatgtggttgagatatgagatgcaagaacttgtatt |
324 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
3808 |
tcaaagacctaataggaatagaggaactgtcaccactcatatacttgacaagagcttcttggagcatgtggttgagatatgagaggaaagaacttgtatt |
3907 |
T |
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| Q |
325 |
cnnnnnnngtcctatctaaggtaggtttggcaaaattctgacattacctcttgggccacaaattcatcgtccgga-ctgatgagaagagtctgaaggcac |
423 |
Q |
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| T |
3908 |
cttttttggtcctatctaaggtaggtttggcaaaattccgacattacctcttgggccacaaattcatcgtccggatttgatgagaagagtctgaagacac |
4007 |
T |
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| Q |
424 |
ttacggacaaaacta--ctcaaacacctgcgcaccaaaggtggcttcacatgttccctggctttgattttgtgattgaatataaa |
506 |
Q |
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||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4008 |
ttacgcacaaaactattctcaaacacctaagcaacaaaggtggcttcacatgttccctggctttgattttgtgattgaatataaa |
4092 |
T |
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