View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_high_14 (Length: 307)
Name: NF8969_high_14
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_high_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 29006343 - 29006045
Alignment:
| Q |
9 |
gtgtttaataagaaaagagacatgtcatttataatggcaaacatgattgagtcttattcttaggtcatctacctagcacattcttcttaatgaatattta |
108 |
Q |
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| T |
29006343 |
gtgtttaataagaaaagagacatgtcatttataatggcaaacatgattgagtcttattcttaggtcatctacctagcacattcttcttaatgaatattta |
29006244 |
T |
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| Q |
109 |
gacattattatcaccataaacaacaggtatgtagacaactggtgtcaattaaagctccaacttgcttcttgaccccctgacccttgtctttggattcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006243 |
gacattattatcaccataaacaacaggtatgtagacaactggtgtcaattaaagctccaacttgcttcttgaccccctgacccttgtctttggattcatt |
29006144 |
T |
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| Q |
209 |
atttattttttatgtcggggccactaggaatcagagttacatttgtttgctttatgtgacaacttctcattcttagtttgatatgagatgtatagtatg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006143 |
atttattttttatgtcggggccactaggaatcagagttacatttgtttgctttatgtgacaacttctcattcttagtttgatatgagatgtatagtatg |
29006045 |
T |
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