View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_high_18 (Length: 244)
Name: NF8969_high_18
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 3275690 - 3275470
Alignment:
| Q |
12 |
agagacataaaatcagagagagaagaggatattgagttcatagatgagatgtagttattagtccttaaaactaaaaatatttcaaaacagtgatcgactc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3275690 |
agagacataaaatcagagagagaagaggatattgagttcatagatgagatgtagctattagtccttaaaactaaaaatatttcaaaacagtgatcgactc |
3275591 |
T |
|
| Q |
112 |
agcaaataatttgaatccttacttttaaccttttctcctttaatcaacccttaatccacttactttgcatctccataatttgactttgctttgtaactgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3275590 |
agcaaataatttgaatccttacttttaaccttttctcctttaatcaacccttaatccacttactttgcatctccataatttgactttgctttgtaactgt |
3275491 |
T |
|
| Q |
212 |
ccaactaatccagcattgatg |
232 |
Q |
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||||||||||||||||||||| |
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| T |
3275490 |
ccaactaatccagcattgatg |
3275470 |
T |
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