View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_high_2 (Length: 537)
Name: NF8969_high_2
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 32 - 527
Target Start/End: Original strand, 1772312 - 1772790
Alignment:
| Q |
32 |
cattgtcgagtttgattgtacacaaagtccaagattgacagtaagcatgcaacatgattgagctcaatactacacatccaagcctaagagaatacacata |
131 |
Q |
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| T |
1772312 |
cattgtccagtttgattgtacaca--gtccaagattgacagtaggcatgcaacatgattgagctcaatactacgcatccaagcctaagagaatacacata |
1772409 |
T |
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| Q |
132 |
ccttattgctaggaacctcgatttttcgtgtggttgtgtcagacccagatataggttgcttttgtcctgaagaagtatcatgctgtaaggtggggtcaat |
231 |
Q |
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| T |
1772410 |
ccttattgctaggaacctcgatttttcgtgtggttgtgtcagacccagatataggttgcttttgtcctgaagaagtatcatgctgtaaggtggggtcaat |
1772509 |
T |
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| Q |
232 |
agagctggaatcaggttgtttgtctccagaagaagcgtcttgctcagttgactcctttgatggttgttcagttgctttagatggctccttgtcattttcc |
331 |
Q |
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| T |
1772510 |
agagctggaatcaggttgtttgtctccagaagaagcgtcttgctcagttgactcctttgatggttgttcagttgctttagatggctccttgtcattttcc |
1772609 |
T |
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| Q |
332 |
ttaccagagtcctcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacat |
431 |
Q |
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| T |
1772610 |
ttaccagagtcctcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacat |
1772709 |
T |
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| Q |
432 |
cttgaacttcctccgaaggagcattttccaaaggagcattttcctctgtatctgtatctgtttctgcctcagcaaccttcttttcttgatgtccat |
527 |
Q |
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| T |
1772710 |
cttgaacttcctccg---------------aaggagcattttcctctgtatctgtatctgtttctgcctcagcaaccttcttttcttgatgtccat |
1772790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 2525438 - 2525576
Alignment:
| Q |
116 |
taagagaatacacataccttattgctaggaacctcgatttttcgtgtggttg---tgtcagacccagatataggttgcttttgtcctgaagaagtatcat |
212 |
Q |
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||||||||| |||||||||||||||||||||||| |||| | ||||||||| |||||||||| |||||||||||||||||||| |||||| ||||| |
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| T |
2525438 |
taagagaatgtacataccttattgctaggaacctcaatttcttgtgtggttgttgtgtcagacccggatataggttgcttttgtccaaaagaagcatcat |
2525537 |
T |
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| Q |
213 |
gctgtaaggtggggtcaatagagctggaatcaggttgtt |
251 |
Q |
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| T |
2525538 |
gctgaaaggtgggatcaattgagctggaatcaagttgtt |
2525576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 2534349 - 2534233
Alignment:
| Q |
344 |
tcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcct |
443 |
Q |
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| T |
2534349 |
tcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtggggtcagtagtttcttctgtattatctttagatacatcttgaacttcct |
2534250 |
T |
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| Q |
444 |
ccgaaggagcattttcc |
460 |
Q |
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| T |
2534249 |
ctgaagaagcgttttcc |
2534233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 375 - 460
Target Start/End: Original strand, 2525604 - 2525689
Alignment:
| Q |
375 |
gaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcctccgaaggagcattttcc |
460 |
Q |
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| T |
2525604 |
gaatctctttggtatcggtaggctcagccgtttcttctgaattatctttagattcatcttgaatttcctcagaatgagcattttcc |
2525689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 2534486 - 2534347
Alignment:
| Q |
111 |
aagcctaagagaatacacataccttattgctaggaacctcgatttttcgtgtgg---ttgtgtcagacccagatataggttgcttttgtc---ctgaaga |
204 |
Q |
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| T |
2534486 |
aagcctaagaaaatgtatataccttattgctaggaacctcaatttctcgtgtggttgttgtgtcagagccggatataggttgattttgtctagaagaaga |
2534387 |
T |
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| Q |
205 |
agtatcatgctgtaaggtggggtcaatagagctggaatca |
244 |
Q |
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| T |
2534386 |
agcataatgctgaaaggtgggatcaatagagctggaatca |
2534347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 2524993 - 2525080
Alignment:
| Q |
32 |
cattgtcgagtttgattgtacacaaagtccaagattgacagtaagcatgcaacatgattgagctcaatactacacatccaagcctaag |
119 |
Q |
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| T |
2524993 |
cattgtcgagtttgattgtacacaaagcccaagattgacaataagaatccgacatgattgagcccaataacacgtatccaagcctaag |
2525080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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