View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_high_3 (Length: 532)
Name: NF8969_high_3
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Complemental strand, 3856736 - 3856223
Alignment:
| Q |
15 |
tggtggtgcctctatataaccctttatcttgttctcatcagaaacgccatttatattgtctagaaatgagaggtcttgatttttcttgccaagagccaat |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3856736 |
tggtggtgcctctatataaccctttatctttttctcatcagaaacgccatttatattgtctagaaatgagaggtcttggtttttcttgccaagagccaat |
3856637 |
T |
|
| Q |
115 |
ttcaatagtttcttatgtatacggtttttctcaccctcgtttacctttgttttaattggatgggtatgcacttgttgagtgtattgatctnnnnnnncaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
3856636 |
ttcaatagtttcttatgtatacggtttttctcaccctcgtttacctttgtcttaattggatgggtatgcacttgttgagtgtattgatctaaaaaaataa |
3856537 |
T |
|
| Q |
215 |
gtaatatatatcaatttagttttattcccatttgaatgagtaaaagacactatttatgactcatgtattttaaatgcttcacctttcttcatagtttcat |
314 |
Q |
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||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856536 |
gtaatat----caatttatttttatccccatttgaatgagtaaaagacactatttatgactcatgtattttaaatgcttcacctttcttcatagtttcat |
3856441 |
T |
|
| Q |
315 |
atgatggacgaggtcgaactgatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagccgcgagtaaatacattagcttggt |
414 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3856440 |
atgatggacaaggtcgaactgatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagacgcgagtaaatacattagcttggt |
3856341 |
T |
|
| Q |
415 |
tgtttgactacggtctagttcaaaccaaaaatggttattgtcataatagttctccgcaattactcgtccaaatttatcttccgacaacggacgacactga |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| |
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| T |
3856340 |
tgtttgactacggtctagttcaaaccaaaaatggttattgtcataatagttctccgcaattactcgttcaaatttatcttcggacaacgggcgacattga |
3856241 |
T |
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| Q |
515 |
agtccgacacgaactttt |
532 |
Q |
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|||||||||||||||||| |
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| T |
3856240 |
agtccgacacgaactttt |
3856223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Complemental strand, 3865493 - 3864980
Alignment:
| Q |
15 |
tggtggtgcctctatataaccctttatcttgttctcatcagaaacgccatttatattgtctagaaatgagaggtcttgatttttcttgccaagagccaat |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3865493 |
tggtggtgcctctatataaccctttatctttttctcatcagaaacgccatttatattgtctagaaatgagaggtcttggtttttcttgccaagagccaat |
3865394 |
T |
|
| Q |
115 |
ttcaatagtttcttatgtatacggtttttctcaccctcgtttacctttgttttaattggatgggtatgcacttgttgagtgtattgatctnnnnnnncaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
3865393 |
ttcaatagtttcttatgtatacggtttttctcaccctcgtttacctttgtcttaattggatgggtatgcacttgttgagtgtattgatctaaaaaaataa |
3865294 |
T |
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| Q |
215 |
gtaatatatatcaatttagttttattcccatttgaatgagtaaaagacactatttatgactcatgtattttaaatgcttcacctttcttcatagtttcat |
314 |
Q |
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||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3865293 |
gtaatat----caatttatttttatccccatttgaatgagtaaaagacactatttatgactcatgtattttaaatgcttcacctttcttcatagtttcat |
3865198 |
T |
|
| Q |
315 |
atgatggacgaggtcgaactgatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagccgcgagtaaatacattagcttggt |
414 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3865197 |
atgatggacaaggtcgaactgatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagacgcgagtaaatacattagcttggt |
3865098 |
T |
|
| Q |
415 |
tgtttgactacggtctagttcaaaccaaaaatggttattgtcataatagttctccgcaattactcgtccaaatttatcttccgacaacggacgacactga |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| |
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| T |
3865097 |
tgtttgactacggtctagttcaaaccaaaaatggttattgtcataatagttctccgcaattactcgttcaaatttatcttcggacaacgggcgacattga |
3864998 |
T |
|
| Q |
515 |
agtccgacacgaactttt |
532 |
Q |
| |
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|||||||||||||||||| |
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| T |
3864997 |
agtccgacacgaactttt |
3864980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 5441128 - 5441298
Alignment:
| Q |
23 |
cctctatataaccctttatcttgttctcatcagaaacgccatttatattgtctagaaatgagaggtcttgatttttcttgccaagagccaatttcaatag |
122 |
Q |
| |
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||||||||||||||||||||||| |||||| |||| | ||||||| | |||||||||| || |||||||| ||| |||||||||||| ||||| |||||| |
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| T |
5441128 |
cctctatataaccctttatcttgctctcattagaagcaccatttacactgtctagaaaagaaaggtcttggtttctcttgccaagagtcaattccaatag |
5441227 |
T |
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| Q |
123 |
tttcttatgtatacggtttttctcaccctcgtttacctttgttttaattggatgggtatgcacttgttgag |
193 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||| | |||||||| |||||| ||||| |||||| |
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| T |
5441228 |
tttcttatgtatacggtttttttcaccttcgtttaccttcttcttaattgggtgggtacgcactggttgag |
5441298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 531
Target Start/End: Original strand, 5441431 - 5441627
Alignment:
| Q |
335 |
gatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagccgcgagtaaatacattagcttggttgtttgactacggtctagtt |
434 |
Q |
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|||||||| ||| ||||||| || |||||| |||| |||||||||||| | || | |||||| |||||||||| |||||||||||||||||| || |
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| T |
5441431 |
gatctccaattcatattataccgtggtacaggtgtaccaggagctattgccgcagaagtaagtaaaaacattagcttatttgtttgactacggtctaatt |
5441530 |
T |
|
| Q |
435 |
caaaccaaaaatggttattgtcataatagttctccgcaattactcgtccaaatttatcttccgacaacggacgacactgaagtccgacacgaacttt |
531 |
Q |
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|||||| |||||||||||| ||||| |||||| | |||||| || ||| |||||||||||| | || |||||||| |||||||| ||||||||||| |
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| T |
5441531 |
caaacctaaaatggttattatcatagtagttccctgcaattgcttgtctaaatttatcttcggttaatggacgacattgaagtccaacacgaacttt |
5441627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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