View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_11 (Length: 569)
Name: NF8969_low_11
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 124 - 563
Target Start/End: Original strand, 4078573 - 4079009
Alignment:
| Q |
124 |
cattaacatttcacacatggtaaatgacatgatatgacaaagtgnnnnnnncagtattgatgacaacatcaacacagcaataaatgtatttacnnnnnnn |
223 |
Q |
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| T |
4078573 |
cattaacatttcacacatggtaaatgacatgatatgacaaagtgaaaaaaacagtattgatgacaacatcaacacagcaataaatgtatttacaaaaaca |
4078672 |
T |
|
| Q |
224 |
nnnnnnnngttgttagaatgttagttaacccnnnnnnngcaaatattctctgacaacttcacctacccagatacccttttatggaaaaagatgannnnnn |
323 |
Q |
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| T |
4078673 |
aaaaaaa-gttgttagaatgttagttaacccaaaaaaagcaaatattctctgacaacttcacctacccagatacccttttatggaaaaagatgatttttt |
4078771 |
T |
|
| Q |
324 |
nnnatttgctaatgaaaaaagatgannnnnnnnaccaaagattaagaaaaatacaataatgagagcattaatcacnnnnnnnnnnnnnnnnctttttata |
423 |
Q |
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| T |
4078772 |
tt-atttgctaatgaaaaaagatgattttttttaccaaagattaagaaaaatacaataatgagagcattaatcacaaaaaaaaataaaa--ctttttata |
4078868 |
T |
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| Q |
424 |
ataatgatagtgttgcaa-aaagagaaagaaaagaacactaacaagttcatctgctaactgaatggcggcgtcactgaaaacttggcggttgccggagtt |
522 |
Q |
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| T |
4078869 |
ataatgatagtgttgcaagaaagagaaagaaaagaacactaacaagttcatctgctaactgaatggcggcgtcactgaaaacttggcggttgccggagtt |
4078968 |
T |
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| Q |
523 |
gctgccgcagaagacacatacccttttgaactctctgcttc |
563 |
Q |
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| T |
4078969 |
gctgccgcagaagacacatacccttttgaactttctgcttc |
4079009 |
T |
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