View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_16 (Length: 528)

Name: NF8969_low_16
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_16
NF8969_low_16
[»] chr2 (5 HSPs)
chr2 (189-483)||(11991265-11991558)
chr2 (14-228)||(12013065-12013276)
chr2 (365-510)||(12021434-12021576)
chr2 (17-173)||(11991588-11991733)
chr2 (52-176)||(12024514-12024633)
[»] scaffold0019 (1 HSPs)
scaffold0019 (399-483)||(62568-62653)
[»] chr7 (1 HSPs)
chr7 (399-483)||(3414182-3414267)
[»] chr5 (2 HSPs)
chr5 (78-124)||(2090629-2090675)
chr5 (117-175)||(43497599-43497657)
[»] chr1 (2 HSPs)
chr1 (74-124)||(17269005-17269055)
chr1 (74-124)||(52532632-52532682)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 9e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 189 - 483
Target Start/End: Complemental strand, 11991558 - 11991265
Alignment:
Q  189 gacaggaaaggaatctcattagataaatggtaaatccttacaaacagcagccataatttggtcaggaactttgccttcccaaagcatacaacca-cagaa 287  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||| ||| |||||    
T  11991558 gacaggaaaggaatttcattagataaatggtaaatccttacaaacagaagccataatttggtcaggaacattggcttcccaaagcttacacccagcagaa 11991459  T
Q  288 agtgagaagctgacaagactacgtgctacagcattacaatctctttcaacaaaaagatacttcaagtattgtctagccttgcaagaacttctatgcagtc 387  Q
    ||||  ||||||||||||||| ||||||||| ||| |||||||||| ||||||  ||||   | |||||| |||||||||||||||||||||||||||||    
T  11991458 agtgctaagctgacaagactatgtgctacagtattgcaatctctttgaacaaa--gataacactagtattctctagccttgcaagaacttctatgcagtc 11991361  T
Q  388 tatgattgaattcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactg-tttctgcatccatctctatgattagattcttgagtt 483  Q
    ||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  11991360 tatgatt-aattcatcagttgcatcaggttttgcagcaccatgtacacaccttactactgatttcagcatccatctctatgattagattcttgagtt 11991265  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 12013276 - 12013065
Alignment:
Q  14 ttggtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactcaatggggtcggtgacgtgaatcaaatta 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  12013276 ttggtgtttgatatattgtttgcattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactaaatggggtcggtgacatgaatcaaatta 12013177  T
Q  114 cgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctcttattttannnnnnngacaggaaaggaatctcattagata 213  Q
    | ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| || ||||        |||||||||||||||||||||||||    
T  12013176 caccataatgtgttgccatgaatcatttctaaagatagactagttaacttaaaatctcttttttttt---tttttgacaggaaaggaatctcattagata 12013080  T
Q  214 aatggtaaatcctta 228  Q
    |||||||||||||||    
T  12013079 aatggtaaatcctta 12013065  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 365 - 510
Target Start/End: Complemental strand, 12021576 - 12021434
Alignment:
Q  365 cttgcaagaacttctatgcagtctatgattgaattcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactgtttctgcatccatctct 464  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||| |  ||||||||||||||| |||||| ||||||||||||    
T  12021576 cttgcaagaacttctatgcaatctatgatt-aattcatcaattgcagcaagttttgcagcaccacgtacacaccttactattgtttcagcatccatctct 12021478  T
Q  465 atgattagattcttgagtttttatgttctgcctgcaacaagcacca 510  Q
    ||||||||||| |||||  || |||||||||| |||||||||||||    
T  12021477 atgattagatttttgag--ttgatgttctgcccgcaacaagcacca 12021434  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 11991733 - 11991588
Alignment:
Q  17 gtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactcaatggggtcggtgacgtgaatcaaattacgc 116  Q
    |||||||||||||||| ||||| |||||||| |   ||||||||||||||||||||| |     |||| |||||||||||||||| ||||||||||| |     
T  11991733 gtgtttgatatattgtatgtatcacatgaacga---caacaaaaactaaagtctttttt-----cactaaatggggtcggtgacgcgaatcaaattatgt 11991642  T
Q  117 cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctc 173  Q
    |||||||||   |||||||||||||||  || |||||| ||||||||||||||||||    
T  11991641 cataatgtg---ccatgaatcatttctgaagatagacttgttaactcaaaatctctc 11991588  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 12024633 - 12024514
Alignment:
Q  52 tcaacaaaaactaaagtcttttcttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgtgttgccatgaatcatttctatagttag 151  Q
    |||||||||||||||||||||||     ||||| ||||||| | ||||| |||||||| | | |||||||||||||| ||||||||||||||| || |||    
T  12024633 tcaacaaaaactaaagtcttttc-----ccactaaatggggccagtgacatgaatcaagtgatgccataatgtgttgtcatgaatcatttctaaagatag 12024539  T
Q  152 actagttaactcaaaatctctctta 176  Q
    ||||||||||| |||||||||||||    
T  12024538 actagttaactgaaaatctctctta 12024514  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 62653 - 62568
Alignment:
Q  399 tcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactgtttctgcatccat-ctctatgattagattcttgagtt 483  Q
    |||||||||||| |||||||||||||| | |  |||||||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  62653 tcatcaattgcaacaggttttgcagcaccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagtt 62568  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 3414182 - 3414267
Alignment:
Q  399 tcatcaattgcatcaggttttgcagcatcgtgtacacaccttactactgtttctgcatccat-ctctatgattagattcttgagtt 483  Q
    |||||||||||| |||||||||||||| | |  |||||||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  3414182 tcatcaattgcaacaggttttgcagcaccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagtt 3414267  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 2090675 - 2090629
Alignment:
Q  78 tcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt 124  Q
    |||||||||||||||||||  || || ||||||||||||||||||||    
T  2090675 tcccactcaatggggtcgggtacatggatcaaattacgccataatgt 2090629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 43497599 - 43497657
Alignment:
Q  117 cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctctt 175  Q
    |||||| ||||  ||||||||||||||| || |||| ||||||||||||| ||||||||    
T  43497599 cataatatgttatcatgaatcatttctaaagatagattagttaactcaaattctctctt 43497657  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 17269005 - 17269055
Alignment:
Q  74 cttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt 124  Q
    ||||||||||| |||||||||||  || || ||||||||||||||||||||    
T  17269005 cttttcccactaaatggggtcggctacatggatcaaattacgccataatgt 17269055  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 52532632 - 52532682
Alignment:
Q  74 cttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt 124  Q
    ||||||||||| | |||||||||  || |||||||||||||||||||||||    
T  52532632 cttttcccactaagtggggtcggctacatgaatcaaattacgccataatgt 52532682  T

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