View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8969_low_18 (Length: 498)
Name: NF8969_low_18
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 2040797 - 2041275
Alignment:
| Q |
18 |
ccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2040797 |
ccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctttc |
2040896 |
T |
|
| Q |
118 |
agtgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2040897 |
gctgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctca |
2040996 |
T |
|
| Q |
218 |
gtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaattta |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2040997 |
gtctgagccactcttttgaccttagcctcatacagctgcaaccaagtgaatgaaactcttttttctttcatcttcttaactacttcattagtgcaattta |
2041096 |
T |
|
| Q |
318 |
taccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaag |
417 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2041097 |
taccaaactgcttctcaaagaactttctccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactggtcaag |
2041196 |
T |
|
| Q |
418 |
tgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaata |
496 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041197 |
tgtgcagtgaggcaagattctctcaagcatatcatgatcaacatgactaacatctccaaggtattttacattatcaata |
2041275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 23 - 498
Target Start/End: Complemental strand, 1352842 - 1352380
Alignment:
| Q |
23 |
ctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctttcagtgg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1352842 |
ctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctttcactgg |
1352743 |
T |
|
| Q |
123 |
gtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctcagtctg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | | |
|
|
| T |
1352742 |
gtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgtagcgtttcgtgagtcgatcaactgcttcattctcagcccg |
1352643 |
T |
|
| Q |
223 |
agccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaatttatacca |
322 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1352642 |
agccatttttttgactttagcctcatacaactgcaaccaagtg-------------tttctttcatcttcttaactacttcattagtgcaatttatacca |
1352556 |
T |
|
| Q |
323 |
aactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgc |
422 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||||||| |
|
|
| T |
1352555 |
aattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccctttatttgtcttctcaatatgcatcaactgttcaagtgtgc |
1352456 |
T |
|
| Q |
423 |
agtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagc |
498 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1352455 |
agtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagc |
1352380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 104 - 498
Target Start/End: Complemental strand, 1357895 - 1357501
Alignment:
| Q |
104 |
caaaatcttctttcagtgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaa |
203 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357895 |
caaaatcttcttttacttggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaa |
1357796 |
T |
|
| Q |
204 |
ctgcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1357795 |
ctgcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaatgaaactcttttttctttcatcttcttaactacttc |
1357696 |
T |
|
| Q |
304 |
attagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgc |
403 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357695 |
attagtgcaatttataccaaattgcttttcaaagaactttttccacaatttatctgttatagggctcaaatccatcccttgagtggacttctcaatatgc |
1357596 |
T |
|
| Q |
404 |
atcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagc |
498 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357595 |
atcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagc |
1357501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 84 - 498
Target Start/End: Complemental strand, 1364732 - 1364331
Alignment:
| Q |
84 |
atccagatccattatctccacaaaatcttctttcagtgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgta |
183 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1364732 |
atccaggtccatcatctccacaaaatcttcttttacttggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgta |
1364633 |
T |
|
| Q |
184 |
gcgttgcgcgagtcgatcaactgcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttct |
283 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1364632 |
gcgttgcgtgagtcgatcaactgcttcattctcagcccgagccatttttttgactttagcctcatacaactgcaaccaagtg-------------tttct |
1364546 |
T |
|
| Q |
284 |
ttcatcttcttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatccctt |
383 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1364545 |
ttcatcttcttaactacttcattagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccctt |
1364446 |
T |
|
| Q |
384 |
gagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1364445 |
gagtggacttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattt |
1364346 |
T |
|
| Q |
484 |
tacattatcaatagc |
498 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1364345 |
tacattatcaatagc |
1364331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 498
Target Start/End: Complemental strand, 36717882 - 36717413
Alignment:
| Q |
23 |
ctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctttcagtgg |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||| ||| || |||||| |||||||||||| | | | |
|
|
| T |
36717882 |
ctattaagaaaatctttctttgacttcttcattatgttgctgctcttcac-----atttg-atccaggtccgttgtctccagaaaatcttcttttattag |
36717789 |
T |
|
| Q |
123 |
gtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctcagtctg |
222 |
Q |
| |
|
|||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36717788 |
gtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctcagcctg |
36717689 |
T |
|
| Q |
223 |
agccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaatttatacca |
322 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36717688 |
agccattttttttaccttagcctcatacagctgcaaccaagtgaatgaaactcttttttctttcatcttcttaactacttcattagtgcaatttatacca |
36717589 |
T |
|
| Q |
323 |
aactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgc |
422 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |
|
|
| T |
36717588 |
aactgcttttcaaagaattttttccacaatttatcagttatagggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgc |
36717489 |
T |
|
| Q |
423 |
agtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagc |
498 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717488 |
agtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagc |
36717413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 255 - 498
Target Start/End: Original strand, 24620337 - 24620579
Alignment:
| Q |
255 |
gcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattg |
354 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||| | |||||| |||||||| |||||| |||||||||||||||| |||| ||| ||||||||| || |
|
|
| T |
24620337 |
gcaaccatgtgaatgaaactattttttctttcatatccttaactacttcatttgtgcaaattataccaaactgcttttcaataaactttttccacagttt |
24620436 |
T |
|
| Q |
355 |
atctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatga |
454 |
Q |
| |
|
|| | |||| ||||||||||||||| || | ||| ||||||||||||||| | | |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
24620437 |
attcgatatatggctcaaatccatcc-ttcattggccttctcaatatgcatgttccggtcaagtgtgcagtgaggcaagattcactcaagcatatgatga |
24620535 |
T |
|
| Q |
455 |
tcaacatgactaacatctccaaggtattttacattatcaatagc |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620536 |
tcaacatgactaacatctccaaggtattttacattatcaatagc |
24620579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 24619733 - 24619969
Alignment:
| Q |
25 |
attaagaaaatccttctttgacttcttcattatgttgctgctcttcac---tgacaagttgtatccagatccattatctccacaaaatcttctttcagtg |
121 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||| || ||||||| ||||||| |||||||||| | | |
|
|
| T |
24619733 |
attaagaaaatatttctttgatttcttcattatgttgctgctcttcacatttgagaagttgtatctaggtccattacctccacacaatcttcttttacta |
24619832 |
T |
|
| Q |
122 |
ggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctcagtct |
221 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| | | || |
|
|
| T |
24619833 |
ggtggaattttggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttttagcattgcgtgggtcgatcaactgcttcatttttaacct |
24619932 |
T |
|
| Q |
222 |
gagccacttttttgaccttagcctcatacagctgcaa |
258 |
Q |
| |
|
|||| | |||||| |||||||| | || ||||||||| |
|
|
| T |
24619933 |
gagctattttttttaccttagctttattcagctgcaa |
24619969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 18179888 - 18180026
Alignment:
| Q |
243 |
cctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacat |
342 |
Q |
| |
|
||||||||| ||||||||| |||| || |||||||||||| ||||| || ||| | |||||| |||||| |||||||||||||||| ||||||||| | |
|
|
| T |
18179888 |
cctcatacaactgcaaccatctgaatgacactcttttttctgtcatcctcctaattatttcatttgtgcaacttataccaaactgcttttcaaagaactt |
18179987 |
T |
|
| Q |
343 |
tttccacaattgatctgttatagggctcaaatccatccc |
381 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
18179988 |
tttccacaatttatctgttaccgggctcaaatccatccc |
18180026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 498
Target Start/End: Original strand, 18180119 - 18180226
Alignment:
| Q |
391 |
cttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacatta |
490 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||| |
|
|
| T |
18180119 |
cttctcgatatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaatta |
18180218 |
T |
|
| Q |
491 |
tcaatagc |
498 |
Q |
| |
|
|| ||||| |
|
|
| T |
18180219 |
tctatagc |
18180226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 18179644 - 18179711
Alignment:
| Q |
178 |
cttgtagcgttgcgcgagtcgatcaactgcttcattctcagtctgagccacttttttgaccttagcct |
245 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
18179644 |
cttgtagcgttccctgagtcgatcaattgcttcattctcagcctgagccacttcttttcccttagcct |
18179711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 18179206 - 18179290
Alignment:
| Q |
26 |
ttaagaaaatccttctttgacttcttcattatgttgctgctcttcac---tgacaagttgtatccagatccattatctccacaaaatc |
110 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||| || |||||| |
|
|
| T |
18179206 |
ttaagaaattctatctttgacttcttcattatgttgct---cttcacatttgacacgttgtatccaggtccattatctacaaaaaatc |
18179290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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