View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_2 (Length: 808)

Name: NF8969_low_2
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_2
NF8969_low_2
[»] chr1 (9 HSPs)
chr1 (16-792)||(33301714-33302488)
chr1 (505-683)||(33250219-33250397)
chr1 (505-683)||(33270391-33270569)
chr1 (532-683)||(33310126-33310277)
chr1 (24-98)||(33250465-33250539)
chr1 (24-98)||(33270637-33270711)
chr1 (28-99)||(33310361-33310432)
chr1 (733-792)||(33250097-33250155)
chr1 (733-792)||(33270269-33270327)
[»] chr7 (2 HSPs)
chr7 (303-398)||(21148660-21148755)
chr7 (297-380)||(34726588-34726671)
[»] chr2 (3 HSPs)
chr2 (291-485)||(2419882-2420076)
chr2 (362-485)||(42510694-42510818)
chr2 (187-271)||(41513823-41513910)
[»] chr8 (2 HSPs)
chr8 (324-485)||(13054306-13054464)
chr8 (428-477)||(11567574-11567623)
[»] chr6 (1 HSPs)
chr6 (422-477)||(5550798-5550853)
[»] chr4 (1 HSPs)
chr4 (290-376)||(34069128-34069214)
[»] chr3 (2 HSPs)
chr3 (427-485)||(15801460-15801518)
chr3 (324-412)||(40192019-40192108)


Alignment Details
Target: chr1 (Bit Score: 712; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 16 - 792
Target Start/End: Complemental strand, 33302488 - 33301714
Alignment:
Q  16 acatcatactcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggtatgattcaactataata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302488 acatcatactcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggtatgattcaactataata 33302389  T
Q  116 atatactttggtagtgtgttttttggtttgattaaatatgcattttactatttggaattataaggcttgatcaatttaatccctcatatttgcaaattaa 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  33302388 gtatactttggtagtgtgttttttggtttgattaaatatgcattttactatttggaattataaggcttgatca-tttaatccctcatatttgcaaaataa 33302290  T
Q  216 cattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatatttatatagtaaagaacaatagaagacgtacatattgacttaagtag 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  33302289 cattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatatttatatagtaaagaacaatagaagacgtaagtattgacttaagtag 33302190  T
Q  316 tattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggactaaa 415  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  33302189 tattttcctgcatcaaaacaagcatagaatctttaaaattctgatacaaaattatagaaaatgactaaatcggttgatatttttaaattcaaggactaaa 33302090  T
Q  416 atgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctatttcctctcttgtgtatgatatagttaacattt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33302089 atgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctatttcctctcttgtgtatgatatagttaaca-tt 33301991  T
Q  516 tcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaa 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301990 tcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaa 33301891  T
Q  616 gatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatcttgtgattgatt 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  33301890 gatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggtacatgaacatttttttctatcttgtgattgatt 33301791  T
Q  716 ttacactttactagtagtaaaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatg 792  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301790 ttacactttactagtagtaaaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatg 33301714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 505 - 683
Target Start/End: Complemental strand, 33250397 - 33250219
Alignment:
Q  505 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 604  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33250397 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33250298  T
Q  605 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta 683  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| |||||| |  ||||||||||||    
T  33250297 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtggtccaccaaaggta 33250219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 505 - 683
Target Start/End: Complemental strand, 33270569 - 33270391
Alignment:
Q  505 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 604  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33270569 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33270470  T
Q  605 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta 683  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| |||||| |  ||||||||||||    
T  33270469 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtggtccaccaaaggta 33270391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 532 - 683
Target Start/End: Complemental strand, 33310277 - 33310126
Alignment:
Q  532 acaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgt 631  Q
    ||||||||||||| |||||||  |||||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  33310277 acaggagagctatcatgacaaaaagggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgt 33310178  T
Q  632 tgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta 683  Q
    ||| | ||| || || |||| ||||| ||||||| | |  ||||||||||||    
T  33310177 tgacagtgctaggctatattacacaagtgatgttcgtggtccaccaaaggta 33310126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 33250539 - 33250465
Alignment:
Q  24 ctcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggt 98  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  33250539 ctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggt 33250465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 33270711 - 33270637
Alignment:
Q  24 ctcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggt 98  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  33270711 ctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggt 33270637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 33310432 - 33310361
Alignment:
Q  28 aaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggta 99  Q
    ||||||||| ||||||| |||||||||||| ||||||||||| |||| ||| ||| ||||||||||||||||    
T  33310432 aaagccttacagaattgtgctagttggtgtggtttgtgatggctatcttgctgttgttagaggcattaggta 33310361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 733 - 792
Target Start/End: Complemental strand, 33250155 - 33250097
Alignment:
Q  733 taaaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatg 792  Q
    |||||||| |||| | |||||||||||| || ||||||||||||||||| ||||||||||    
T  33250155 taaaatgtcaagaagataattttctttt-cacacaaaacagcttattggatggaaggatg 33250097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 733 - 792
Target Start/End: Complemental strand, 33270327 - 33270269
Alignment:
Q  733 taaaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatg 792  Q
    |||||||| |||| | |||||||||||| || ||||||||||||||||| ||||||||||    
T  33270327 taaaatgtcaagaagataattttctttt-cacacaaaacagcttattggatggaaggatg 33270269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 21148660 - 21148755
Alignment:
Q  303 ttgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttt 398  Q
    ||||||||| |||| |||||||| |||||||||| |||| || |||||||||| ||||| | || |||| ||||||||||||| | ||||||||||    
T  21148660 ttgacttaaatagtgttttcttgaatcaaaacaaacataaaacctttaaaattgtgataaagaaattgataaaatgactaaattgattgatatttt 21148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 34726671 - 34726588
Alignment:
Q  297 tacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgac 380  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||  |||  ||||||||| ||||||||    
T  34726671 tacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac 34726588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 485
Target Start/End: Original strand, 2419882 - 2420076
Alignment:
Q  291 aagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggtt 390  Q
    ||||| ||||||| || |||| |||| |||| |||||||||||||||  || || ||||||| || || | |||||||||| |||| |||||||| | ||    
T  2419882 aagacatacatatagaattaaatagtcttttgttgcatcaaaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgatt 2419980  T
Q  391 gatatttttaaattcaag-gactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 485  Q
    |||||||||||||| ||| ||||||| || ||||| | |||||||||  ||| | || || ||   ||||| |||| | |||||||||||||||||    
T  2419981 gatatttttaaatttaagagactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattt 2420076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 485
Target Start/End: Complemental strand, 42510818 - 42510694
Alignment:
Q  362 caaaatttgagaaaatgactaaatcggttgatatttttaaattcaagg-actaaaatgttattttaaaaatttgagcgactaaattgaccgacctttaca 460  Q
    |||||||||| ||| ||||||||| | |||| |||||| |||| |||| |||||| |  |||||   | |||| |  |||||||||||||||||||||||    
T  42510818 caaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttaca 42510719  T
Q  461 ttttcaaagactaaaatacctattt 485  Q
     |||||| ||||||||| |||||||    
T  42510718 atttcaaggactaaaatgcctattt 42510694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 41513823 - 41513910
Alignment:
Q  187 caatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaa---caatcaatctactccctccatcaaaatattt 271  Q
    ||||||| ||| ||| ||||||||| || ||  |||||||||||||||||||||   |||||||| || || ||||||||||||||||    
T  41513823 caatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaatttagtctctccatcaaaatattt 41513910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 485
Target Start/End: Complemental strand, 13054464 - 13054306
Alignment:
Q  324 tgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttatt 423  Q
    |||||||||| |||||||||| |||||||||| ||  | ||||||| | ||||||||||||  | ||||||||||| |||| ||  |||||| || ||||    
T  13054464 tgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaa-aaaatgactaaaatgtttgatatttttcaatttaa--actaaattgctatt 13054368  T
Q  424 ttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 485  Q
    | | | ||||||| |||||||||||||| || ||  | |||||| || |||||| |||||||    
T  13054367 tcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctattt 13054306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 11567623 - 11567574
Alignment:
Q  428 aaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 477  Q
    ||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaat 11567574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 477
Target Start/End: Original strand, 5550798 - 5550853
Alignment:
Q  422 ttttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 477  Q
    |||| |||||||||| || ||||||||| |||| ||||| ||||||||||||||||    
T  5550798 ttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaat 5550853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 34069128 - 34069214
Alignment:
Q  290 gaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaa 376  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||||||| | ||   | ||||||||| || |||||||||||| ||||    
T  34069128 gaagacgtacatatcgacttaaatagttctttgttgcatcaaaacaaacctaatctgtttaaaattgtggtacaaaatttgaaaaaa 34069214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 485
Target Start/End: Complemental strand, 15801518 - 15801460
Alignment:
Q  427 aaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 485  Q
    |||||||||| || | |||||||||||| ||||| ||| ||||||||||||| ||||||    
T  15801518 aaaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctattt 15801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 40192019 - 40192108
Alignment:
Q  324 tgcatcaaaacaagcatagaatctttaaaattc-tgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggact 412  Q
    ||||||||||| | ||||||| ||||||||||  || | | || ||||||||||||| ||||| | ||||||||||| |||| |||||||    
T  40192019 tgcatcaaaaccaacatagaacctttaaaatttatggtgcgaagtttgagaaaatgattaaattgattgatatttttcaatttaaggact 40192108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University