View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_20 (Length: 489)

Name: NF8969_low_20
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_20
NF8969_low_20
[»] chr8 (30 HSPs)
chr8 (166-362)||(10128068-10128270)
chr8 (18-106)||(10128257-10128345)
chr8 (17-106)||(17791563-17791652)
chr8 (18-76)||(39466638-39466696)
chr8 (18-94)||(30381826-30381902)
chr8 (18-94)||(37566525-37566601)
chr8 (18-76)||(14781252-14781310)
chr8 (18-76)||(18957838-18957896)
chr8 (18-76)||(32498923-32498981)
chr8 (18-76)||(44724901-44724959)
chr8 (18-94)||(4656082-4656158)
chr8 (18-94)||(7149040-7149116)
chr8 (18-94)||(9458513-9458589)
chr8 (18-94)||(10795379-10795455)
chr8 (18-94)||(40264279-40264355)
chr8 (19-94)||(38805929-38806004)
chr8 (21-76)||(43307661-43307716)
chr8 (18-76)||(18305081-18305139)
chr8 (21-94)||(43604382-43604455)
chr8 (18-94)||(1605804-1605880)
chr8 (18-94)||(16365291-16365367)
chr8 (166-202)||(17791468-17791504)
chr8 (28-106)||(17791491-17791565)
chr8 (277-308)||(17791251-17791282)
chr8 (17-76)||(19716982-19717043)
chr8 (20-94)||(42275950-42276024)
chr8 (17-76)||(42304744-42304805)
chr8 (21-94)||(31626314-31626387)
chr8 (18-94)||(40012298-40012375)
chr8 (52-100)||(39189489-39189537)
[»] chr5 (16 HSPs)
chr5 (18-106)||(26629516-26629604)
chr5 (18-94)||(13717109-13717185)
chr5 (17-94)||(10553742-10553819)
chr5 (17-94)||(13949804-13949881)
chr5 (18-94)||(11632690-11632766)
chr5 (22-94)||(18676939-18677011)
chr5 (17-94)||(6901359-6901436)
chr5 (18-94)||(40411423-40411500)
chr5 (18-94)||(10553443-10553519)
chr5 (18-76)||(4239584-4239643)
chr5 (18-49)||(6827956-6827987)
chr5 (18-76)||(13999218-13999277)
chr5 (18-76)||(37014888-37014947)
chr5 (18-76)||(40012821-40012880)
chr5 (18-76)||(7947138-7947196)
chr5 (166-210)||(26629591-26629635)
[»] chr3 (32 HSPs)
chr3 (18-106)||(33417059-33417147)
chr3 (18-94)||(20833912-20833988)
chr3 (18-94)||(36054014-36054090)
chr3 (18-94)||(43152036-43152112)
chr3 (18-76)||(31645368-31645426)
chr3 (18-76)||(36673264-36673322)
chr3 (18-76)||(44904961-44905019)
chr3 (18-91)||(24149841-24149914)
chr3 (17-94)||(44707951-44708028)
chr3 (18-94)||(2124709-2124785)
chr3 (18-94)||(30589851-30589927)
chr3 (18-94)||(52617091-52617167)
chr3 (253-340)||(33416736-33416817)
chr3 (17-94)||(10661201-10661279)
chr3 (18-76)||(11432579-11432637)
chr3 (18-96)||(35731859-35731937)
chr3 (18-94)||(27593952-27594029)
chr3 (18-94)||(23360583-23360659)
chr3 (18-94)||(23367423-23367499)
chr3 (18-94)||(26292568-26292644)
chr3 (18-94)||(26556873-26556949)
chr3 (18-94)||(27239331-27239406)
chr3 (28-106)||(33416986-33417061)
chr3 (32-76)||(40898100-40898144)
chr3 (18-94)||(46223310-46223386)
chr3 (18-76)||(45254559-45254617)
chr3 (18-76)||(10728129-10728189)
chr3 (18-59)||(39337445-39337486)
chr3 (18-59)||(50902422-50902463)
chr3 (18-46)||(23754601-23754629)
chr3 (18-94)||(38628824-38628900)
chr3 (18-94)||(45214088-45214164)
[»] chr1 (24 HSPs)
chr1 (17-94)||(9174893-9174970)
chr1 (18-94)||(36403090-36403166)
chr1 (18-76)||(6313608-6313666)
chr1 (18-76)||(25613124-25613182)
chr1 (18-76)||(29395542-29395600)
chr1 (18-76)||(38535261-38535319)
chr1 (18-76)||(38557479-38557537)
chr1 (18-76)||(45273593-45273651)
chr1 (18-94)||(20111686-20111762)
chr1 (18-94)||(26881820-26881896)
chr1 (18-94)||(45319481-45319557)
chr1 (18-94)||(45535763-45535839)
chr1 (18-94)||(48198961-48199037)
chr1 (18-94)||(48207544-48207620)
chr1 (18-94)||(52706394-52706470)
chr1 (18-85)||(1923373-1923440)
chr1 (18-76)||(49232016-49232074)
chr1 (18-76)||(51702626-51702684)
chr1 (18-94)||(10897647-10897724)
chr1 (18-76)||(9321623-9321682)
chr1 (18-76)||(28386562-28386621)
chr1 (32-76)||(5494276-5494320)
chr1 (18-94)||(8139981-8140057)
chr1 (18-94)||(9832723-9832798)
[»] chr7 (27 HSPs)
chr7 (18-94)||(18839308-18839384)
chr7 (18-94)||(39029067-39029143)
chr7 (18-76)||(28343342-28343400)
chr7 (18-94)||(12252390-12252466)
chr7 (18-94)||(30111799-30111875)
chr7 (18-76)||(23102323-23102381)
chr7 (18-76)||(37971510-37971568)
chr7 (21-94)||(47032326-47032399)
chr7 (18-94)||(152867-152943)
chr7 (18-94)||(27417652-27417728)
chr7 (20-76)||(48136368-48136424)
chr7 (18-76)||(12741405-12741464)
chr7 (18-76)||(7994188-7994246)
chr7 (18-76)||(30823619-30823677)
chr7 (20-94)||(47912530-47912604)
chr7 (18-76)||(510678-510738)
chr7 (18-94)||(29893970-29894047)
chr7 (18-94)||(39300430-39300507)
chr7 (18-94)||(33475543-33475619)
chr7 (18-94)||(43056692-43056768)
chr7 (18-76)||(29613908-29613967)
chr7 (18-76)||(3023957-3024014)
chr7 (18-76)||(39785128-39785188)
chr7 (32-81)||(44120295-44120344)
chr7 (18-79)||(21068385-21068448)
chr7 (26-86)||(36354664-36354723)
chr7 (18-94)||(42677251-42677327)
[»] chr4 (29 HSPs)
chr4 (277-360)||(27529809-27529886)
chr4 (19-94)||(3434832-3434907)
chr4 (18-73)||(47686848-47686903)
chr4 (18-76)||(5442423-5442481)
chr4 (18-76)||(27769096-27769154)
chr4 (18-76)||(32683139-32683197)
chr4 (18-76)||(48262107-48262165)
chr4 (20-81)||(30966191-30966252)
chr4 (18-94)||(38234617-38234693)
chr4 (18-94)||(42315888-42315964)
chr4 (18-94)||(48531925-48532001)
chr4 (18-94)||(54510566-54510642)
chr4 (18-94)||(5117821-5117899)
chr4 (21-76)||(29649137-29649192)
chr4 (18-81)||(41726133-41726196)
chr4 (18-85)||(44930624-44930691)
chr4 (18-76)||(23988229-23988287)
chr4 (18-76)||(54342179-54342237)
chr4 (21-94)||(8583008-8583081)
chr4 (18-94)||(32323083-32323160)
chr4 (18-94)||(7809004-7809080)
chr4 (18-94)||(7820955-7821031)
chr4 (18-76)||(28846174-28846233)
chr4 (20-94)||(49833978-49834053)
chr4 (18-76)||(50019223-50019281)
chr4 (52-100)||(20021944-20021992)
chr4 (16-76)||(33449095-33449155)
chr4 (52-100)||(36478851-36478899)
chr4 (18-94)||(42217452-42217527)
[»] chr2 (20 HSPs)
chr2 (20-76)||(7027937-7027993)
chr2 (18-94)||(24192667-24192743)
chr2 (30-106)||(35906960-35907036)
chr2 (18-89)||(24935295-24935366)
chr2 (18-89)||(25683988-25684059)
chr2 (18-76)||(3464619-3464677)
chr2 (18-76)||(18178304-18178362)
chr2 (18-76)||(26789817-26789875)
chr2 (18-94)||(11535680-11535756)
chr2 (18-94)||(29941895-29941971)
chr2 (18-94)||(45547921-45547997)
chr2 (18-73)||(28845613-28845668)
chr2 (18-76)||(25289187-25289245)
chr2 (18-94)||(7486961-7487037)
chr2 (18-76)||(214629-214688)
chr2 (18-89)||(30046596-30046667)
chr2 (18-89)||(30137640-30137711)
chr2 (18-85)||(34027781-34027848)
chr2 (18-94)||(2289290-2289366)
chr2 (20-93)||(39093990-39094065)
[»] chr6 (10 HSPs)
chr6 (18-89)||(35165651-35165722)
chr6 (18-76)||(31068452-31068510)
chr6 (18-76)||(31896669-31896727)
chr6 (18-94)||(3109354-3109430)
chr6 (18-94)||(7104538-7104614)
chr6 (18-94)||(8790016-8790092)
chr6 (18-94)||(29864756-29864832)
chr6 (18-76)||(14261555-14261613)
chr6 (18-76)||(30384176-30384234)
chr6 (18-94)||(6475747-6475823)
[»] scaffold0095 (1 HSPs)
scaffold0095 (18-76)||(21805-21863)
[»] scaffold0940 (1 HSPs)
scaffold0940 (18-75)||(3578-3635)
[»] scaffold0237 (1 HSPs)
scaffold0237 (18-94)||(20451-20527)
[»] scaffold0153 (1 HSPs)
scaffold0153 (18-94)||(33829-33905)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-94)||(80797-80873)
[»] scaffold0839 (1 HSPs)
scaffold0839 (18-76)||(3117-3176)
[»] scaffold0054 (1 HSPs)
scaffold0054 (18-76)||(36404-36463)
[»] scaffold0042 (1 HSPs)
scaffold0042 (18-76)||(57174-57232)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-94)||(942-1018)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 166 - 362
Target Start/End: Complemental strand, 10128270 - 10128068
Alignment:
Q  166 taaagaatctatgagattttaaaagacttttttcaaaagagttttaagaattcataattattgttttatcgtagaacnnnnnnngccgtgaacacaaaaa 265  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||       ||||||||||||||||    
T  10128270 taaagactctatgagattttaaaagacttttttcaaaagacttttaaaaatacataattattgttttatcgtagaactttttttgccgtgaacacaaaaa 10128171  T
Q  266 caa------tnnnnnnntacatcaaagttgtaaaattaacaatgactaagaataatgaagtttttataaaacaatgtacaatcagaaacataaatcacgt 359  Q
    |||      |       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  10128170 caaaaacaataaaaaaatacatcaaagttgtaaaattaacaatgactaagaataatgaaatttttataaaacaatgtacaattagaaacataaatcacgt 10128071  T
Q  360 agg 362  Q
    |||    
T  10128070 agg 10128068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 10128345 - 10128257
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10128345 tgtattggattgagaatttaaaagattattttgattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 10128257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 17791652 - 17791563
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    |||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||||| ||||||||||||  |||||||||||||||    
T  17791652 atgtattggattgagattttaaaagactattttgattgaaaatgtcttaaagattttaaaagattttgtaggagcgtaaagactctatga 17791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 39466638 - 39466696
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  39466638 tgtattggattaagattttaaaagattattttaataaaaaaagtctttaagattttaaa 39466696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 30381826 - 30381902
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |  ||||||||||| ||||||||||| |||| || |||| ||||    
T  30381826 tgtattggattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 30381902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37566525 - 37566601
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |  ||||||||||| ||||||||||| |||| || |||| ||||    
T  37566525 tgtattggattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 37566601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 14781252 - 14781310
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  14781252 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 14781310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 18957838 - 18957896
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  18957838 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 18957896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 32498981 - 32498923
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  32498981 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 32498923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 44724901 - 44724959
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  44724901 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 44724959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 4656158 - 4656082
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  4656158 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 4656082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 7149116 - 7149040
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  7149116 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 7149040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9458589 - 9458513
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  9458589 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 9458513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 10795379 - 10795455
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  10795379 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 10795455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 40264279 - 40264355
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  40264279 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 40264355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 38805929 - 38806004
Alignment:
Q  19 gtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||||| ||||||  |  ||||||||||  |||||||||| || ||| ||||||||||    
T  38805929 gtattggattgagattttaaaagactattttggtagaaaaagtctttgagattttaaaagactttttaggattgta 38806004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 43307661 - 43307716
Alignment:
Q  21 attggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||| ||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  43307661 attggattaagattttaaaagactattttaataaaaagagtctttaagattttaaa 43307716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 18305081 - 18305139
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  ||||||||||||  |||||||| ||||||||||| |||||||||||    
T  18305081 tgtattggattaggattttaaaagacaattttaataaaaaaagtctttaagattttaaa 18305139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 43604382 - 43604455
Alignment:
Q  21 attggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  43604382 attggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 43604455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 1605804 - 1605880
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||| | | |||| ||  ||||| |||| ||||||||||| || |||| |||||||||    
T  1605804 tgtattggattgagattttaaaatactgttttgatagaaaaaatcttgaagattttaaaagactttgcaggattgta 1605880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 16365367 - 16365291
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||| |||  ||||||||||||  |||||||| ||||||||||| ||||||||||| || |||||  |||||||    
T  16365367 tgtattgaattaggattttaaaagacaattttaataaaaaaagtctttaagattttaaaagactttgtgcgattgta 16365291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 17791504 - 17791468
Alignment:
Q  166 taaagaatctatgagattttaaaagacttttttcaaa 202  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17791504 taaagactctatgagattttaaaagacttttttcaaa 17791468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 17791565 - 17791491
Alignment:
Q  28 tgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    ||||||||||||||| |   || ||| |||||||||| |||||||||||  ||||| ||||||||||||||||||||||    
T  17791565 tgagattttaaaagact---ttgattgaaaaagtcttaaagattttaaaa-attttataggattgtaaagactctatga 17791491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 308
Target Start/End: Complemental strand, 17791282 - 17791251
Alignment:
Q  277 tacatcaaagttgtaaaattaacaatgactaa 308  Q
    ||||||||||||||||||||||||||||||||    
T  17791282 tacatcaaagttgtaaaattaacaatgactaa 17791251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 19716982 - 19717043
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaat--taaaaaagtcttcaagattttaaa 76  Q
    ||||||||||||  |||||||||||| |||||||||   ||||||||||| |||||||||||    
T  19716982 atgtattggattaggattttaaaagactattttaataaaaaaaaagtctttaagattttaaa 19717043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 42276024 - 42275950
Alignment:
Q  20 tattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||| |||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  42276024 tattagattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 42275950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 42304744 - 42304805
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaat--taaaaaagtcttcaagattttaaa 76  Q
    ||||||||||||  |||||||||||| |||||||||   ||||||||||| |||||||||||    
T  42304744 atgtattggattaggattttaaaagactattttaataaaaaaaaagtctttaagattttaaa 42304805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 31626387 - 31626314
Alignment:
Q  21 attggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||  |||||||||| | ||||||||| |||||||| || ||||||||||| |||| |||  |||||||    
T  31626387 attggattaggattttaaaacactattttaataaaaaaagtatttaagattttaaaagattgtgtgagattgta 31626314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 40012298 - 40012375
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaa-aagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||| ||||||||||| | ||||||||| |||| |||||||  |||||||||| || |||||  |||||||    
T  40012298 tgtattggattaagattttaaaatactattttaataaaaacaagtctttgagattttaaaagagtttgtgagattgta 40012375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 39189489 - 39189537
Alignment:
Q  52 ttaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagact 100  Q
    ||||||||||||  ||||||||||| |||||||||||||| ||| ||||    
T  39189489 ttaaaaaagtctcaaagattttaaaagattttgtaggattttaatgact 39189537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 26629516 - 26629604
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||| || |||||||| |||||||||||||||||||||||||||||    
T  26629516 tgtattggattgagattttaaaagactattttgattgaaaaagtcttgaaaattttaaaagattttgtaggattgtaaagactctatga 26629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 13717185 - 13717109
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| ||||||||||| |||| |||  |||||||    
T  13717185 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaaagattgtgtgagattgta 13717109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 10553819 - 10553742
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  10553819 atgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 10553742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 13949804 - 13949881
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  13949804 atgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 13949881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 11632690 - 11632766
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  11632690 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 11632766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 18676939 - 18677011
Alignment:
Q  22 ttggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||| |||||| ||  ||||| |||| ||||||||||| |||||||| | ||||||    
T  18676939 ttggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagattttgttgtattgta 18677011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 6901359 - 6901436
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||| |||||||||||||||||||| ||||||    |||||||| || ||||||||||| |||| ||||||| ||||    
T  6901359 atgtaatggattgagattttaaaagactattttggcaaaaaaagttttgaagattttaaaagattgtgtaggaatgta 6901436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 40411500 - 40411423
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  |||||| |||| ||||||||||| || ||||| ||||||||    
T  40411500 tgtattggattgagattttaaaagactgttttgatagaaaaaaatcttgaagattttaaaagactttgttggattgta 40411423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 10553443 - 10553519
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||| |||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  10553443 tgtattggattgagatttaaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 10553519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 4239584 - 4239643
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  4239584 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 4239643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 6827956 - 6827987
Alignment:
Q  18 tgtattggattgagattttaaaagattatttt 49  Q
    ||||||||||||||||||||||||||||||||    
T  6827956 tgtattggattgagattttaaaagattatttt 6827987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 13999218 - 13999277
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  13999218 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 13999277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 37014947 - 37014888
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||   |||||||||||||||||||||  ||||||||||| |||||||||||    
T  37014947 tgtattggattagaattttaaaagattattttaataaaaaaaagtctttaagattttaaa 37014888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 40012821 - 40012880
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  40012821 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 40012880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7947138 - 7947196
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||| |||  |||||||||||| ||||||| | ||||||||||| |||||||||||    
T  7947138 tgtattgaattaggattttaaaagactattttattaaaaaaagtctttaagattttaaa 7947196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 26629591 - 26629635
Alignment:
Q  166 taaagaatctatgagattttaaaagacttttttcaaaagagtttt 210  Q
    |||||| |||||||||||||||||||||| ||| |||||| ||||    
T  26629591 taaagactctatgagattttaaaagacttgttttaaaagactttt 26629635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 33417147 - 33417059
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||| || |||||||| |||||| || || ||||||||||||||||    
T  33417147 tgtattggattgagattttaaaagactattttgattgaaaaagtcttgaaaattttaaaagattttatatgagtgtaaagactctatga 33417059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 20833988 - 20833912
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| ||||||||||| |||| |||| |||||||    
T  20833988 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaaagattgtgtaagattgta 20833912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 36054014 - 36054090
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  36054014 tgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 36054090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 43152112 - 43152036
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||||   || |||||||| ||||||||||| |||| ||||||| ||||    
T  43152112 tgtattggattgagattttaaaagactattttagcaaacaaagtcttgaagattttaaaagattgtgtaggaatgta 43152036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31645368 - 31645426
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||| |||||||||||||  |||||||| ||||||||||| |||||||||||    
T  31645368 tgtattggattaagattttaaaagacaattttaataaaaaaagtctttaagattttaaa 31645426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 36673264 - 36673322
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  36673264 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 36673322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 44904961 - 44905019
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||| ||||||||||||| ||||||||| ||||| ||||| |||||||||||    
T  44904961 tgtattggattaagattttaaaagactattttaataaaaaaggtctttaagattttaaa 44905019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 24149841 - 24149914
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggatt 91  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||| |||| |||||||||||||| ||||| |||||    
T  24149841 tgtattggattaagattttaaaagactattttgatagaaaaaatcttgaagattttaaatgactttgttggatt 24149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 44708028 - 44707951
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||| |||  |||||||||||||||||||||| |||||| |||| ||||||||||| || |||||  |||||||    
T  44708028 atgtattgaattatgattttaaaagattattttaataaaaaaaatctttaagattttaaaagactttgtgagattgta 44707951  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 2124709 - 2124785
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| || |||||| |||| || |||||||| || ||||| ||||||||    
T  2124709 tgtattggattgagattttaaaagactgttttgataaaaaaaatcttgaaaattttaaaagactttgttggattgta 2124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30589927 - 30589851
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  30589927 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 30589851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 52617091 - 52617167
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  ||||||||||||  |||||||| ||||||||||| ||||||||||| || |||||  |||||||    
T  52617091 tgtattggattaggattttaaaagacaattttaataaaaaaagtctttaagattttaaaagactttgtgagattgta 52617167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 33416817 - 33416736
Alignment:
Q  253 gtgaacacaaaaacaatnnnnnnntacatcaaagttgtaaaattaacaatgactaagaataatgaagtttttataaaacaatgtacaa 340  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||      |||| ||||| ||||||||||||||||||    
T  33416817 gtgaacacaaaaacaataaaaaaatacatcaaagttgtaaaattaacaatgac------taataaagttcttataaaacaatgtacaa 33416736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 10661279 - 10661201
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||  |||||||||||| |||||||||  ||||||||||| ||||||||||| |||| |||  |||||||    
T  10661279 atgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaaagattgtgtgagattgta 10661201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11432637 - 11432579
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| || ||||||||    
T  11432637 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaaaattttaaa 11432579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 35731937 - 35731859
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaa 96  Q
    ||||||||||||||||||||| ||||| |||| ||  ||||| |||| ||||||||||| || ||||| ||||| ||||    
T  35731937 tgtattggattgagattttaacagattgttttgatagaaaaaatcttgaagattttaaaagactttgttggattttaaa 35731859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 27594029 - 27593952
Alignment:
Q  18 tgtattggattgagattttaaaagattatttt-aattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |   ||||||||||| ||||||||||| |||| || |||| ||||    
T  27594029 tgtattggattgagattttaaaagactattttgacaaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 27593952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 23360659 - 23360583
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||| ||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  23360659 tgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgta 23360583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 23367499 - 23367423
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||| ||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  23367499 tgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgta 23367423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 26292568 - 26292644
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||  |||| ||||||||||| || ||||| ||||||||    
T  26292568 tgtattggattgagattttaaaagactgttttgatagaaaatatcttgaagattttaaaagactttgttggattgta 26292644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 26556949 - 26556873
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || |||||  |||||||    
T  26556949 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttaaagattttaaaagactttgttcgattgta 26556873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27239331 - 27239406
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| ||||||||| |||||||| || ||||||||||| || | |||| |||||||    
T  27239331 tgtattggattaggattttaaaagactattttaataaaaaaagt-tttaagattttaaaagactgtgtaagattgta 27239406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 33417061 - 33416986
Alignment:
Q  28 tgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    ||||||||||||||| |   || ||| ||||| |||| ||||||||||| |||||| |||||||||||||||| |||||    
T  33417061 tgagattttaaaagaat---ttgattgaaaaaatcttgaagattttaaaagattttataggattgtaaagactttatga 33416986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 40898144 - 40898100
Alignment:
Q  32 attttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||    
T  40898144 attttaaaagactattttaataaaaaaagtctttaagattttaaa 40898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 46223310 - 46223386
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||| ||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  46223310 tgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 46223386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 45254559 - 45254617
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||| ||||  |||||||||||| ||||||||| |||||| |||| |||||||||||    
T  45254559 tgtattagattaggattttaaaagactattttaataaaaaaaatctttaagattttaaa 45254617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 10728129 - 10728189
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat--taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||   ||||||||||| |||||||||||    
T  10728129 tgtattggattaggattttaaaagactattttaataaaaaaaaagtctttaagattttaaa 10728189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 39337445 - 39337486
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaa 59  Q
    |||| ||||||||||||||||||||||||||| || ||||||    
T  39337445 tgtaatggattgagattttaaaagattattttgataaaaaaa 39337486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 50902422 - 50902463
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaa 59  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||    
T  50902422 tgtattggattaagattttaaaagactattttaataaaaaaa 50902463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 23754629 - 23754601
Alignment:
Q  18 tgtattggattgagattttaaaagattat 46  Q
    |||||||||||||||||||||||||||||    
T  23754629 tgtattggattgagattttaaaagattat 23754601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 38628824 - 38628900
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| || |||||||| || ||||| | ||||||    
T  38628824 tgtattggattgagattttaaaagactcttttgatagaaaaaatcttgaaaattttaaaagactttgttgaattgta 38628900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 45214088 - 45214164
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||| ||||||| ||||    |||||| |||| ||||||||||| || |||||  |||||||    
T  45214088 tgtattggattgagattttgaaagattgttttggcaaaaaaaatcttaaagattttaaaagactttgtgtgattgta 45214164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 9174970 - 9174893
Alignment:
Q  17 atgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||| |||||||||||||||||| ||||||||  ||||||||||| ||||||||||| |||| ||||||| ||||    
T  9174970 atgtatttgattgagattttaaaagactattttaacaaaaaaagtcttgaagattttaaaagattgtgtaggaatgta 9174893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 36403166 - 36403090
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |  ||||||||||| ||||||||||| |||| || |||| ||||    
T  36403166 tgtattggattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 36403090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6313666 - 6313608
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  6313666 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 6313608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 25613182 - 25613124
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  25613182 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 25613124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29395542 - 29395600
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  29395542 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 29395600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 38535261 - 38535319
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||||||||||||| |||||||| || |||||||||||    
T  38535261 tgtattggattaggattttaaaagattattttaataaaaaaagtatttaagattttaaa 38535319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 38557479 - 38557537
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||||||||||||| |||||||| || |||||||||||    
T  38557479 tgtattggattaggattttaaaagattattttaataaaaaaagtatttaagattttaaa 38557537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 45273651 - 45273593
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||||||||||||| |||||||| || |||||||||||    
T  45273651 tgtattggattaggattttaaaagattattttaataaaaaaagtttttaagattttaaa 45273593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 20111686 - 20111762
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||| ||||  |||||||||||| ||||||||| ||||||||||| ||||||||||| || |||||  |||||||    
T  20111686 tgtatttgattacgattttaaaagactattttaataaaaaaagtctttaagattttaaaagactttgtgagattgta 20111762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 26881820 - 26881896
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| ||  ||||| |||| ||||||||| | || ||||| ||||||||    
T  26881820 tgtattggattgagattttaaaagactattttgatagaaaaaatcttaaagattttagaagactttgttggattgta 26881896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 45319557 - 45319481
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  45319557 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 45319481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 45535839 - 45535763
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||| | |||||||| ||||||||    
T  45535839 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttagaagattttgttggattgta 45535763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48199037 - 48198961
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| | ||||||  ||||||||||| ||||||||||| || ||||| ||||||||    
T  48199037 tgtattggattaggattttaaaagacttttttaacaaaaaaagtctttaagattttaaaagactttgtgggattgta 48198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48207620 - 48207544
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| | ||||||  ||||||||||| ||||||||||| || ||||| ||||||||    
T  48207620 tgtattggattaggattttaaaagacttttttaacaaaaaaagtctttaagattttaaaagactttgtgggattgta 48207544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 52706470 - 52706394
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  52706470 tgtattggattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 52706394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 1923373 - 1923440
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgt 85  Q
    ||||||||||||||||||||||||||||||||    || ||| |||| ||||||||||| ||||||||    
T  1923373 tgtattggattgagattttaaaagattattttggcaaacaaaatcttgaagattttaaaagattttgt 1923440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 49232074 - 49232016
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  ||||||||||||  |||||||| ||||||||||| |||||||||||    
T  49232074 tgtattggattaggattttaaaagacaattttaataaaaaaagtctttaagattttaaa 49232016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 51702684 - 51702626
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||| |||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  51702684 tgtataggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 51702626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 10897724 - 10897647
Alignment:
Q  18 tgtattggattgagattttaaaagattatttt-aattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |   ||||||||||| ||||||||||| |||| || |||| ||||    
T  10897724 tgtattggattgagattttaaaagactattttgagaaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 10897647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9321623 - 9321682
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    ||||||| |||| |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  9321623 tgtattgaattgggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 9321682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 28386562 - 28386621
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  28386562 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 28386621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 5494276 - 5494320
Alignment:
Q  32 attttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||||||||||||| ||| |||| || |||||||||||    
T  5494276 attttaaaagattattttaataaaagaagtatttaagattttaaa 5494320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 8139981 - 8140057
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||| | ||||||||||| |||||||||  ||||  |||| ||||||||||| |||| |||  |||||||    
T  8139981 tgtattggattaaaattttaaaagactattttaatataaaatatctttaagattttaaaagattgtgtgagattgta 8140057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9832798 - 9832723
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||| |||||||||||||||||| || ||| |  ||||||||||| ||||||||||| |||| || |||| ||||    
T  9832798 tgtattagattgagattttaaaagacta-tttgacaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 9832723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 18839384 - 18839308
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||  |||||||    
T  18839384 tgtattggattaggattttaaaagattattttaataaaaaaagtctttaagattttaaaagattgtgtgagattgta 18839308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 39029143 - 39029067
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| |||||||||||  ||| |||| |||||||    
T  39029143 tgtattggattaggattttaaaagattattttaataaaaaaagtctttaagattttaaaatattgtgtaagattgta 39029067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 28343400 - 28343342
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  28343400 tgtattggattgggattttaaaagactattttaataaaaaaagtctttaagattttaaa 28343342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 12252390 - 12252466
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||||| |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  12252390 tgtattggattgagattttaaaagattgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 12252466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30111875 - 30111799
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  30111875 tgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 30111799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 23102381 - 23102323
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  23102381 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 23102323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37971510 - 37971568
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  37971510 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 37971568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 47032399 - 47032326
Alignment:
Q  21 attggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||| |||||| || || |||||||| ||||||||||| |||| || |||| ||||    
T  47032399 attggattgagattttaaaagactattttgataaataaagtcttgaagattttaaaagattgtggaggaatgta 47032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 152943 - 152867
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  152943 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 152867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27417652 - 27417728
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| ||  ||||| |||| ||||||||||| || |||||  |||||||    
T  27417652 tgtattggattgagattttaaaagagtattttgatagaaaaaatcttgaagattttaaaagactttgttagattgta 27417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 48136368 - 48136424
Alignment:
Q  20 tattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||  |||||||||||| ||||||||| |||||| ||||||||||||||||    
T  48136368 tattggattaggattttaaaagactattttaataaaaaaaatcttcaagattttaaa 48136424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12741464 - 12741405
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    ||||||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||    
T  12741464 tgtattggattaagattttaaaagactattttaataaaaaaaagtctttaagattttaaa 12741405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7994246 - 7994188
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| || |||||||| |||||||||||    
T  7994246 tgtattggattaggattttaaaagagtattttaataaagaaagtctttaagattttaaa 7994188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 30823677 - 30823619
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||| |||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  30823677 tgtattgaattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 30823619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 47912530 - 47912604
Alignment:
Q  20 tattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  47912530 tattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 47912604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 510738 - 510678
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat--taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||| |||||||||||| |||||||||   ||||||||||| |||||||||||    
T  510738 tgtattggattgggattttaaaagactattttaataaaaaaaaagtctttaagattttaaa 510678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 29894047 - 29893970
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| ||||||||||| |||| |||  |||||||    
T  29894047 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaaagattgtgtgagattgta 29893970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 39300430 - 39300507
Alignment:
Q  18 tgtattggattgagattttaaaagattatttt-aattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |   ||||||||||| ||||||||||| |||| || |||| ||||    
T  39300430 tgtattggattgagattttaaaagactattttgacaaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 39300507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 33475619 - 33475543
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||| |||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  33475619 tgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 33475543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 43056692 - 43056768
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||| ||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  43056692 tgtattgaattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 43056768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29613908 - 29613967
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  29613908 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 29613967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 3024014 - 3023957
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||| ||||||||| || |||||||||||    
T  3024014 tgtattggattaggattttaaaagactattttaa-taaaaaagtttttaagattttaaa 3023957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 39785188 - 39785128
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat--taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||   ||||||||||| |||||||||||    
T  39785188 tgtattggattaggattttaaaagactattttaataaaaaaaaagtctttaagattttaaa 39785128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 44120295 - 44120344
Alignment:
Q  32 attttaaaagattattttaattaaaaaagtcttcaagattttaaatgatt 81  Q
    ||||||||||| ||||||||| ||||||||||| || |||||||| ||||    
T  44120295 attttaaaagactattttaataaaaaaagtctttaacattttaaaagatt 44120344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 21068448 - 21068385
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat--taaaaaagtcttcaagattttaaatga 79  Q
    |||||||||||  |||||||||||| |||||||||   ||||||||||| || |||||||||||    
T  21068448 tgtattggattaggattttaaaagactattttaataaaaaaaaagtctttaaaattttaaatga 21068385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 36354664 - 36354723
Alignment:
Q  26 attgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgta 86  Q
    ||||||||||||||||| |||||| | |||||||||| | ||||||||||| |||| ||||    
T  36354664 attgagattttaaaagactattttga-taaaaaagtcatgaagattttaaaagattgtgta 36354723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 42677251 - 42677327
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||  |||||| ||||    |||||| |||| ||||||||||| ||||||||  |||||||    
T  42677251 tgtattggattgagattttgcaagattgttttggcaaaaaaaatcttaaagattttaaaagattttgtgtgattgta 42677327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 27529886 - 27529809
Alignment:
Q  277 tacatcaaagttgtaaaattaacaatgactaagaataatgaagtttttataaaacaatgtacaatcagaaacataaatcacgta 360  Q
    ||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||| ||||||||| ||||||||    
T  27529886 tacatcaaagttgtaaaattaacaatgactaaa------gaagttcttataaaacaatgtacaattagaaacatacatcacgta 27529809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 3434832 - 3434907
Alignment:
Q  19 gtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||| ||||||||||||||||| |||||||||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  3434832 gtattgaattgagattttaaaagactattttaatagaaaaaatcttgaagattttaaaagactttgttggattgta 3434907  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 47686903 - 47686848
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagatttt 73  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||    
T  47686903 tgtattggattgagattttaaaagactattttgataaaaaaagtcttgaagatttt 47686848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5442481 - 5442423
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  5442481 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 5442423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 27769154 - 27769096
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  27769154 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 27769096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 32683139 - 32683197
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  32683139 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 32683197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 48262165 - 48262107
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  48262165 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 48262107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 30966191 - 30966252
Alignment:
Q  20 tattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgatt 81  Q
    |||||||||  |||||||||||||||||||||| ||||| ||||| ||||||||||| ||||    
T  30966191 tattggattatgattttaaaagattattttaataaaaaatgtctttaagattttaaaagatt 30966252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 38234693 - 38234617
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| | ||||||  ||||||||||| ||||||||||| || ||||| ||||||||    
T  38234693 tgtattggattaggattttaaaagacttttttaacaaaaaaagtctttaagattttaaaagactttgtgggattgta 38234617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 42315964 - 42315888
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  42315964 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 42315888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 48531925 - 48532001
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||| ||||  |||||||||||| ||||||||| ||| ||||||| ||||||||||| |||| |||| |||||||    
T  48531925 tgtatttgattaggattttaaaagactattttaataaaataagtctttaagattttaaaagattctgtaagattgta 48532001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 54510642 - 54510566
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| |  ||||||||||  ||||||||||| |||| || |||| ||||    
T  54510642 tgtattggattgagattttaaaagactattttgacaaaaaaagtctggaagattttaaaagattgtggaggaatgta 54510566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 5117899 - 5117821
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaatt--aaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| | |  ||||||||||| ||||||||||| |||| || |||| ||||    
T  5117899 tgtattggattgagattttaaaagactattttgaataaaaaaaagtcttgaagattttaaaagattgtgaaggaatgta 5117821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 29649137 - 29649192
Alignment:
Q  21 attggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  29649137 attggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 29649192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 41726196 - 41726133
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgatt 81  Q
    |||||||||||  |||||||||||| ||||||||| ||||| ||||| ||||||||||| ||||    
T  41726196 tgtattggattatgattttaaaagactattttaataaaaaatgtctttaagattttaaaagatt 41726133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 44930691 - 44930624
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgt 85  Q
    ||||||||||||||||||||||||| | |||| || |||||| |||| ||||||||||| || |||||    
T  44930691 tgtattggattgagattttaaaagactgttttgataaaaaaaatcttaaagattttaaaagactttgt 44930624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 23988287 - 23988229
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| |||||| |||| |||||||||||    
T  23988287 tgtattggattaggattttaaaagactattttaataaaaaaaatctttaagattttaaa 23988229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 54342237 - 54342179
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||   ||||||||||| ||||||||| ||||||||||| |||||||||||    
T  54342237 tgtattggattagaattttaaaagactattttaataaaaaaagtctttaagattttaaa 54342179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 8583008 - 8583081
Alignment:
Q  21 attggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  8583008 attggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 8583081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 32323160 - 32323083
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| ||||||||||| |||| |||  |||||||    
T  32323160 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaaagattgtgtgagattgta 32323083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 7809080 - 7809004
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |  ||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  7809080 tgtattggattgagattttaaaagactggtttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 7809004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 7821031 - 7820955
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |  ||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  7821031 tgtattggattgagattttaaaagactgatttgatagaaaaattcttgaagattttaaaagactttgttggattgta 7820955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 28846174 - 28846233
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtc-ttcaagattttaaa 76  Q
    ||||||||||||||||||||||||| |||||| || |||||| || || |||||||||||    
T  28846174 tgtattggattgagattttaaaagactattttgatgaaaaaaatcttttaagattttaaa 28846233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 49833978 - 49834053
Alignment:
Q  20 tattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||  |||||||||||| |||||||||  ||||||||||| ||||||||||| |||| |||  |||||||    
T  49833978 tattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaaagattatgtgagattgta 49834053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 50019281 - 50019223
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||   ||||||||||| ||||||||| ||||||||||| || ||||||||    
T  50019281 tgtattggattagaattttaaaagactattttaataaaaaaagtctttaaaattttaaa 50019223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 20021992 - 20021944
Alignment:
Q  52 ttaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagact 100  Q
    ||||||||||||  ||||||||||| |||||||||||||| ||| ||||    
T  20021992 ttaaaaaagtctcaaagattttaaaagattttgtaggattttaatgact 20021944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 33449095 - 33449155
Alignment:
Q  16 catgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||||| |||||||||||| |||||||  | ||| |||||||  ||||||||||    
T  33449095 catgtattggattaagattttaaaaggttatttttgtaaaagaagtctttgagattttaaa 33449155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 36478851 - 36478899
Alignment:
Q  52 ttaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagact 100  Q
    ||||||||||||| ||||||||||| || ||||||||||| ||| ||||    
T  36478851 ttaaaaaagtcttgaagattttaaaagactttgtaggattttaatgact 36478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 42217452 - 42217527
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||| |||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  42217452 tgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaa-gactttgttggattgta 42217527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 7027993 - 7027937
Alignment:
Q  20 tattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||  |||||||||||||||||||||| ||||||||||| |||||||||||    
T  7027993 tattggattaggattttaaaagattattttaataaaaaaagtctttaagattttaaa 7027937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24192667 - 24192743
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| |||||| || |||||||| || ||||||||||| |||| || |||| ||||    
T  24192667 tgtattggattgagattttaaaagactattttgataaaaaaagttttgaagattttaaaagattgtggaggaatgta 24192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 35907036 - 35906960
Alignment:
Q  30 agattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgtaaagactctatga 106  Q
    ||||||||||||| |||||| || ||||||||||| |||||||||||||| |||| |||||| ||  ||||||||||    
T  35907036 agattttaaaagactattttgatgaaaaaagtctttaagattttaaatgactttgcaggattatattgactctatga 35906960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 24935295 - 24935366
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtagga 89  Q
    ||||||||||||||||||||||||| ||||||  | ||||||||| | ||||||||||| |||| |||||||    
T  24935295 tgtattggattgagattttaaaagactattttggtaaaaaaagtcatgaagattttaaaagattgtgtagga 24935366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 25683988 - 25684059
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtagga 89  Q
    ||||||||||||||||||||||||| ||||||  | ||||||||| | ||||||||||| |||| |||||||    
T  25683988 tgtattggattgagattttaaaagactattttggtaaaaaaagtcatgaagattttaaaagattgtgtagga 25684059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 3464677 - 3464619
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  ||||||| |||| ||||||||||||||||||||| |||||||||||    
T  3464677 tgtattggattaggattttacaagactattttaattaaaaaagtctttaagattttaaa 3464619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 18178362 - 18178304
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  18178362 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 18178304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26789875 - 26789817
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  26789875 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 26789817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 11535756 - 11535680
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||| ||||||||||||||||| |||||| |  ||||||||||| ||||||||||| |||| || |||| ||||    
T  11535756 tgtattgaattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaagattgtggaggaatgta 11535680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 29941971 - 29941895
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  29941971 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 29941895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 45547997 - 45547921
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  45547997 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 45547921  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 28845668 - 28845613
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagatttt 73  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| ||||||||    
T  28845668 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagatttt 28845613  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 25289245 - 25289187
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| |||||| |||| |||||||||||    
T  25289245 tgtattggattaggattttaaaagactattttaataaaaaaaatctttaagattttaaa 25289187  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 7486961 - 7487037
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||||||||   |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  7486961 tgtattggattgagattttaaaagaccgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 7487037  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 214629 - 214688
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtc-ttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||| || |||||||||||    
T  214629 tgtattggattaggattttaaaagactattttaataaaaaaagtcttttaagattttaaa 214688  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 30046667 - 30046596
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtagga 89  Q
    ||||||||||||| ||||| ||||| ||||||  | ||||||||| | ||||||||||| |||| |||||||    
T  30046667 tgtattggattgaaattttgaaagactattttggtaaaaaaagtcatgaagattttaaaagattgtgtagga 30046596  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 30137711 - 30137640
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtagga 89  Q
    ||||||||||||| ||||| ||||| ||||||  | ||||||||| | ||||||||||| |||| |||||||    
T  30137711 tgtattggattgaaattttgaaagactattttggtaaaaaaagtcatgaagattttaaaagattgtgtagga 30137640  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 34027781 - 34027848
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgt 85  Q
    ||||||||||||||||||||||| ||||||||    || ||| |||| ||||||||||| ||||||||    
T  34027781 tgtattggattgagattttaaaatattattttggcaaacaaaatcttgaagattttaaaggattttgt 34027848  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 2289366 - 2289290
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||| |||||||||||||| |||||   |||| | |||| ||||||||||| || |||||  |||||||    
T  2289366 tgtattggattgggattttaaaagattgttttagaaaaaagaatcttaaagattttaaaagactttgtgtgattgta 2289290  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 39093990 - 39094065
Alignment:
Q  20 tattggattgagattttaaaagattattttaatt--aaaaaagtcttcaagattttaaatgattttgtaggattgt 93  Q
    ||||||| ||||| |||||||||||||||||| |  |||||| |||| ||||||||  | || |||||||||||||    
T  39093990 tattggaatgagaatttaaaagattattttaactaaaaaaaaatcttgaagatttttcaagactttgtaggattgt 39094065  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35165722 - 35165651
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtagga 89  Q
    ||||||||||||||||||||||||| ||||||  | ||||||||| | ||||||||||| |||| |||||||    
T  35165722 tgtattggattgagattttaaaagactattttggtaaaaaaagtcatgaagattttaaaagattgtgtagga 35165651  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31068510 - 31068452
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  31068510 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 31068452  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31896727 - 31896669
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| |||||||||||    
T  31896727 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaaa 31896669  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 3109354 - 3109430
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  3109354 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 3109430  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 7104614 - 7104538
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| | ||||||  ||||||||||| ||||||||||| || ||||| ||||||||    
T  7104614 tgtattggattaggattttaaaagacttttttaacaaaaaaagtctttaagattttaaaagactttgtgggattgta 7104538  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 8790016 - 8790092
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||  |||||||||||| | ||||||  ||||||||||| ||||||||||| || ||||| ||||||||    
T  8790016 tgtattggattaggattttaaaagacttttttaacaaaaaaagtctttaagattttaaaagactttgtgggattgta 8790092  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 29864756 - 29864832
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  29864756 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 29864832  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 14261555 - 14261613
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  ||||||||||||  |||||||| ||||||||||| |||||||||||    
T  14261555 tgtattggattatgattttaaaagacaattttaataaaaaaagtctttaagattttaaa 14261613  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 30384176 - 30384234
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  30384176 tgtattggattaggattttaaaagactattttaataaaaaaagcctttaagattttaaa 30384234  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6475747 - 6475823
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||| ||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  6475747 tgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 6475823  T

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Target: scaffold0095 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 21863 - 21805
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||| || ||||||||    
T  21863 tgtattggattaagattttaaaagattattttaatacaaaaagtctttaacattttaaa 21805  T

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Target: scaffold0940 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 3578 - 3635
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaa 75  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||| ||||||||||    
T  3578 tgtattggattaggattttaaaagactattttaataaaaaaagtctttaagattttaa 3635  T

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Target: scaffold0237 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 20451 - 20527
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  20451 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 20527  T

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Target: scaffold0153 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 33829 - 33905
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  33829 tgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 33905  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 80797 - 80873
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    ||||||||||||||||||||||||| | |||| ||  ||||| |||| ||||||||||| || ||||| ||||||||    
T  80797 tgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgta 80873  T

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Target: scaffold0839 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 3117 - 3176
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||| |||| ||||||||||||| |||||||||  ||||||||||| |||||||||||    
T  3117 tgtattagattaagattttaaaagactattttaataaaaaaaagtctttaagattttaaa 3176  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 36404 - 36463
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaat-taaaaaagtcttcaagattttaaa 76  Q
    |||||||||||  |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  36404 tgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaa 36463  T

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Target: scaffold0042 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 57174 - 57232
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaa 76  Q
    |||||||||||   ||||||||||| ||||||||| ||||||||| | |||||||||||    
T  57174 tgtattggattagaattttaaaagactattttaataaaaaaagtccttaagattttaaa 57232  T

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Target: scaffold0472 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 942 - 1018
Alignment:
Q  18 tgtattggattgagattttaaaagattattttaattaaaaaagtcttcaagattttaaatgattttgtaggattgta 94  Q
    |||||||||||||||||||  |||||| ||||    |||||| |||| ||||||||||| ||||||||  |||||||    
T  942 tgtattggattgagattttgcaagattgttttggcaaaaaaaatcttaaagattttaaaagattttgtgtgattgta 1018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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