View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_21 (Length: 481)

Name: NF8969_low_21
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_21
NF8969_low_21
[»] chr2 (12 HSPs)
chr2 (80-481)||(16951783-16952185)
chr2 (80-481)||(17022448-17022850)
chr2 (407-481)||(17060082-17060156)
chr2 (370-450)||(20572344-20572424)
chr2 (319-477)||(25504567-25504725)
chr2 (326-478)||(22884800-22884951)
chr2 (319-475)||(24308389-24308550)
chr2 (327-411)||(4472253-4472337)
chr2 (370-478)||(12257269-12257378)
chr2 (418-475)||(13699042-13699100)
chr2 (369-414)||(2063185-2063230)
chr2 (421-476)||(33788391-33788447)
[»] chr7 (4 HSPs)
chr7 (319-478)||(23983486-23983646)
chr7 (391-478)||(28534240-28534328)
chr7 (329-478)||(22567781-22567929)
chr7 (370-478)||(31409691-31409800)
[»] chr1 (13 HSPs)
chr1 (321-480)||(41126132-41126291)
chr1 (320-478)||(38544396-38544555)
chr1 (328-475)||(37200386-37200535)
chr1 (370-434)||(16577571-16577635)
chr1 (352-475)||(42374430-42374553)
chr1 (353-478)||(33383512-33383637)
chr1 (384-478)||(26602553-26602648)
chr1 (394-475)||(17033854-17033936)
chr1 (331-430)||(18844971-18845070)
chr1 (327-410)||(27905743-27905825)
chr1 (425-473)||(17993868-17993917)
chr1 (331-392)||(32882696-32882757)
chr1 (352-409)||(34158955-34159012)
[»] scaffold1613 (1 HSPs)
scaffold1613 (320-478)||(675-834)
[»] chr3 (6 HSPs)
chr3 (321-454)||(45354589-45354722)
chr3 (382-476)||(27399228-27399323)
chr3 (384-475)||(823141-823233)
chr3 (418-465)||(16266009-16266057)
chr3 (420-475)||(25594289-25594345)
chr3 (321-478)||(13017969-13018126)
[»] chr6 (3 HSPs)
chr6 (319-478)||(17278141-17278301)
chr6 (369-465)||(33968326-33968423)
chr6 (369-478)||(32935031-32935142)
[»] chr5 (5 HSPs)
chr5 (319-477)||(8731182-8731340)
chr5 (321-434)||(24071942-24072055)
chr5 (347-478)||(39183873-39184003)
chr5 (371-478)||(17853763-17853871)
chr5 (327-410)||(25657807-25657889)
[»] chr8 (5 HSPs)
chr8 (319-472)||(25184800-25184953)
chr8 (327-477)||(15906952-15907103)
chr8 (327-478)||(9831690-9831840)
chr8 (373-478)||(1760889-1760996)
chr8 (320-372)||(17720387-17720439)
[»] chr4 (3 HSPs)
chr4 (319-411)||(46487590-46487682)
chr4 (352-393)||(19814930-19814971)
chr4 (332-392)||(49747857-49747917)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 80 - 481
Target Start/End: Original strand, 16951783 - 16952185
Alignment:
Q  80 ctatttcattcaaaatgttaaatgcccatctttaaactttttgagagatcattattatttattagataatctcctcatttaaatacaatattttataatt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16951783 ctatttcattcaaaatgttaaatgcccatctttaaactttttgagagatcattattatttattagataatctcctcatttaaatacaatattttataatt 16951882  T
Q  180 gtatatatataccatcttcattgaaacctctgtcaagttttgtaacatacattggatgaaatagccaataggtaacannnnnnnnaacatgaaattttat 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  16951883 gtatatatataccatcttcattgaaacctctgtcaagttttgtaacatacattggatgaaatagccaataggtaacattttttttaacatgaaattttat 16951982  T
Q  280 ttaacagccagatctctacacaagac-nnnnnnnnngacaggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaac 378  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16951983 ttaacagccagatctctacacaagacaaaaaaaaaagacaggtgatttagagaatacaaactatagacgtcgtatataggcagaacatccaaaaataaac 16952082  T
Q  379 atcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagac 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16952083 atcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagac 16952182  T
Q  479 gcc 481  Q
    |||    
T  16952183 gcc 16952185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 80 - 481
Target Start/End: Original strand, 17022448 - 17022850
Alignment:
Q  80 ctatttcattcaaaatgttaaatgcccatctttaaactttttgagagatcattattatttattagataatctcctcatttaaatacaatattttataatt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17022448 ctatttcattcaaaatgttaaatgcccatctttaaactttttgagagatcattattatttattagataatctcctcatttaaatacaatattttataatt 17022547  T
Q  180 gtatatatataccatcttcattgaaacctctgtcaagttttgtaacatacattggatgaaatagccaataggtaacannnnnnnnaacatgaaattttat 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  17022548 gtatatatataccatcttcattgaaacctctgtcaagttttgtaacatacattggatgaaatagccaataggtaacattttttttaacatgaaattttat 17022647  T
Q  280 ttaacagccagatctctacacaagac-nnnnnnnnngacaggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaac 378  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17022648 ttaacagccagatctctacacaagacaaaaaaaaaagacaggtgatttagagaatacaaactatagacgtcgtatataggcagaacatccaaaaataaac 17022747  T
Q  379 atcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagac 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17022748 atcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagac 17022847  T
Q  479 gcc 481  Q
    |||    
T  17022848 gcc 17022850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 17060082 - 17060156
Alignment:
Q  407 cctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagacgcc 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17060082 cctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagacgcc 17060156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 20572424 - 20572344
Alignment:
Q  370 aaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac 450  Q
    |||||||||| |||||||||||| |||||||||||||| || ||||  |||||||||||||||||||| ||||||||||||    
T  20572424 aaaataaacaccataaaagacacccctacacacaacacttactcataccctaccttcaacacccatgaggacaacacccac 20572344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 477
Target Start/End: Original strand, 25504567 - 25504725
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgc 418  Q
    ||||||| ||||||||||||| | || || || |||||| |  |||| ||||||||||||| || ||||||| | |||||||||||||||||||||   |    
T  25504567 ggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacca-aaaagaccc-cctacacacaacacctagtcaaacc 25504664  T
Q  419 ctaccttcaacacccatgacgac-aacaccca-caaaataaacatcaccacttaaaacaga 477  Q
    | ||||||||||||| ||| ||| |||||||| |||||||||||||||||| |||||||||    
T  25504665 ccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacaga 25504725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 478
Target Start/End: Original strand, 22884800 - 22884951
Alignment:
Q  326 tagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctacctt 425  Q
    |||||||||||||||| || ||||| |||||||| ||||| || |||||||||  |||| || |||| ||||| || | ||||||| |    || |||||    
T  22884800 tagagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaactccatacaaaacacccctactcatagcacctagcccaacccaacctt 22884899  T
Q  426 caacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagac 478  Q
    |||||||||||  |||||||||||| ||| |||||||||||| ||||||||||    
T  22884900 caacacccatgtggacaacacccactaaa-aaacatcaccacctaaaacagac 22884951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 475
Target Start/End: Original strand, 24308389 - 24308550
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgc 418  Q
    ||||||||||||||||||||||| |  | ||| ||||| |  |||||  ||||| ||||||||||||||||||| |||||||| || |||||||||   |    
T  24308389 ggtgatttagagaatacaaactaaaagcatcgtatatatgaggaacactcaaaagtaaacatcataaaagacac-cctacacagaatacctagtcaaacc 24308487  T
Q  419 ctaccttcaacaccc-----atgacgacaacaccca-caaaataaacatcaccacttaaaaca 475  Q
    |||| |||||||| |     |||||||||||||||| |||||||||||||| ||| |||||||    
T  24308488 ctactttcaacactcatctgatgacgacaacacccaccaaaataaacatcatcacctaaaaca 24308550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 4472337 - 4472253
Alignment:
Q  327 agagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctag 411  Q
    ||||||||||||||| || ||||| |||||| | |||||||| |||||||||| |||||||  ||| ||||||||||||||||||    
T  4472337 agagaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaatcacccctacacacaacacctag 4472253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 478
Target Start/End: Original strand, 12257269 - 12257378
Alignment:
Q  370 aaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccact 468  Q
    |||||||||| ||||||| ||||  ||||||||||||||||  ||   ||||||  |||||| ||||  ||||||||| | |||||||||||||||||||    
T  12257269 aaaataaacaccataaaaaacacatctacacacaacacctaaccacgccctaccaacaacactcatgctgacaacacctatcaaaataaacatcaccact 12257368  T
Q  469 taaaacagac 478  Q
    ||||| ||||    
T  12257369 taaaagagac 12257378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 13699042 - 13699100
Alignment:
Q  418 cctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaaca 475  Q
    |||||||||||||||| ||| || ||||||||| ||||||||||||||||| |||||||    
T  13699042 cctaccttcaacacccctgaagataacacccaccaaaataaacatcaccacctaaaaca 13699100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 2063230 - 2063185
Alignment:
Q  369 aaaaataaacatcataaaagacactcctacacacaacacctagtca 414  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||    
T  2063230 aaaaataaacaccataaaagacatccctacacacaacacctagtca 2063185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 476
Target Start/End: Original strand, 33788391 - 33788447
Alignment:
Q  421 accttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacag 476  Q
    |||||||||||||||||  ||||||||||| |||||||||||  |||| ||||||||    
T  33788391 accttcaacacccatgagtacaacacccactaaaataaacattgccacctaaaacag 33788447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 23983646 - 23983486
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgc 418  Q
    ||||||| |||||||||||| || || | ||| |||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||  |    
T  23983646 ggtgattcagagaatacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaagacatccctacacacaacacctagtcatacc 23983547  T
Q  419 ctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
     |||||||||||| ||||| ||||||||||| ||||||||||| |||||| ||||||||||    
T  23983546 ttaccttcaacacacatgaggacaacacccaccaaaataaacaccaccacctaaaacagac 23983486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 28534240 - 28534328
Alignment:
Q  391 actcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    |||||||||||||||| |||| ||   |||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||    
T  28534240 actcctacacacaacaactagccaaaccctaccttcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagac 28534328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 478
Target Start/End: Original strand, 22567781 - 22567929
Alignment:
Q  329 agaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaa 428  Q
    ||||||||||| | || || || |||||||| ||||| | ||||| | ||| ||||||| |||  |||||||||||||||||||||   |||||||||||    
T  22567781 agaatacaaacaaaaggcgccgtatataggcggaaca-caaaaaaaacacaccataaaa-acagccctacacacaacacctagtcaaaccctaccttcaa 22567878  T
Q  429 cacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    ||||| |   ||||||| ||| ||||||| |||||||||| ||||||||||    
T  22567879 cacccctagggacaacatccaccaaaatacacatcaccacctaaaacagac 22567929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 478
Target Start/End: Original strand, 31409691 - 31409800
Alignment:
Q  370 aaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccc-acaaaataaacatcaccact 468  Q
    |||||||||| ||| ||||||||  |||| |||||||||||| || | | || ||| |||| |||||| ||||||||||  |||||||||||||| |||     
T  31409691 aaaataaacaccattaaagacaccactacccacaacacctagccaatccatatctttaacatccatgaggacaacaccctccaaaataaacatcatcaca 31409790  T
Q  469 taaaacagac 478  Q
    ||||||||||    
T  31409791 taaaacagac 31409800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 321 - 480
Target Start/End: Original strand, 41126132 - 41126291
Alignment:
Q  321 tgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcct 420  Q
    ||||| ||||||||||||||| || | ||| ||||||| |||||| || ||||||||||| ||||||||||| |||||||||||||| ||| |||  |||    
T  41126132 tgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaacattataaaagacacccctacacacaacacatagccataccct 41126231  T
Q  421 accttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagacgc 480  Q
    |||||||||||||| || ||||||||| |||||||| | |||||||| ||||||||||||    
T  41126232 accttcaacacccaagaggacaacacctacaaaatacatatcaccacctaaaacagacgc 41126291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 320 - 478
Target Start/End: Original strand, 38544396 - 38544555
Alignment:
Q  320 gtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcc 419  Q
    |||||| ||||||||||||||| |||||||| ||||| |  ||||| || |||||||||| |||||||||||  |||||||||||||||||| ||   |     
T  38544396 gtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagacatccctacacacaacacctagccaaatcg 38544495  T
Q  420 taccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    |||||||||||||||||| |||||||  || |||||||||||||||||| ||||||||||    
T  38544496 taccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagac 38544555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 475
Target Start/End: Complemental strand, 37200535 - 37200386
Alignment:
Q  328 gagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacac-acaacacctagtcattgcctaccttc 426  Q
    |||||||||||||| |||| ||| |||||||| |||||||| ||||||||| ||| | || |||| ||||||| | ||||||||||     || || |||    
T  37200535 gagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaacttcaaacaaaacacccctacacaaaaacacctagttcaacccaacattc 37200436  T
Q  427 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaaca 475  Q
    ||||| ||||| |||||||||||| ||||||||||||||||| |||||||    
T  37200435 aacactcatgaggacaacacccactaaaataaacatcaccacctaaaaca 37200386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 16577635 - 16577571
Alignment:
Q  370 aaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacaccca 434  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||  ||||| |||||||||||    
T  16577635 aaaataaacatcataaaagacacccctacacacaacatctagtcataccctactttcaacaccca 16577571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 475
Target Start/End: Complemental strand, 42374553 - 42374430
Alignment:
Q  352 atataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-c 450  Q
    |||||||| ||||| || |||||||||||||| |||||||||| |||||||| |||||| |||  || || ||||||||||| ||  |||||| |||| |    
T  42374553 atataggcggaacacccgaaaataaacatcat-aaagacactcgtacacacagcacctaatcaaagcataacttcaacacccttggggacaacccccacc 42374455  T
Q  451 aaaataaacatcaccacttaaaaca 475  Q
    || |||||||||||||| |||||||    
T  42374454 aagataaacatcaccacctaaaaca 42374430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 478
Target Start/End: Original strand, 33383512 - 33383637
Alignment:
Q  353 tataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-ca 451  Q
    |||||||||||||  ||||| |||||| |||||||||||||| |||||||||||||||  ||    || | |||||||||||||||||||||| ||| ||    
T  33383512 tataggcagaacacacaaaa-taaacaccataaaagacactcatacacacaacacctaaccaagctctgctttcaacacccatgacgacaacaaccacca 33383610  T
Q  452 aaataaacatcaccacttaaaacagac 478  Q
    |||||||  |||||||| ||| |||||    
T  33383611 aaataaatctcaccactaaaatcagac 33383637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 478
Target Start/End: Original strand, 26602553 - 26602648
Alignment:
Q  384 aaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    |||| |||| |||||||||||||||||| ||   ||||||||||||| ||  || |||||||||||  ||||||||||||||||| ||| ||||||    
T  26602553 aaaatacacccctacacacaacacctagccaaaccctaccttcaacaaccccgaggacaacacccatgaaaataaacatcaccacctaacacagac 26602648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 17033936 - 17033854
Alignment:
Q  394 cctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaaca 475  Q
    ||||||||||||| |||||||   |||||||||||||||| ||  ||||||| |||| ||||||||||| ||||| |||||||    
T  17033936 cctacacacaacaactagtcaaaccctaccttcaacacccctggggacaacatccacgaaaataaacattaccacctaaaaca 17033854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 430
Target Start/End: Original strand, 18844971 - 18845070
Alignment:
Q  331 aatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaaca 430  Q
    ||||||||| | || |||||  ||||| | ||| |||| ||||||||||||| ||||||| | |||||||| ||||||||| ||   |||||||||||||    
T  18844971 aatacaaacaaaaggcgtcgtgtatagacggaatatccgaaaataaacatcaaaaaagacccccctacacataacacctagccacaccctaccttcaaca 18845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 27905825 - 27905743
Alignment:
Q  327 agagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacaccta 410  Q
    ||||| ||||||||| || ||||| |||||||  ||||| | ||||||||||| |||||||||||| | |||| ||||||||||    
T  27905825 agagactacaaactagaggcgtcgtatataggtggaaca-caaaaaataaacaccataaaagacacccatacagacaacaccta 27905743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 17993868 - 17993917
Alignment:
Q  425 tcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaa 473  Q
    ||||||||||| | |||||||||||| ||||||||||||||| |||||||    
T  17993868 tcaacacccataaggacaacacccaccaaaataaacatcaccccttaaaa 17993917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 32882757 - 32882696
Alignment:
Q  331 aatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacac 392  Q
    ||||||||||| || || || |||||||||||||| || |||||||||| | ||||||||||    
T  32882757 aatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacac 32882696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 34159012 - 34158955
Alignment:
Q  352 atataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacct 409  Q
    |||||| || |||| | ||||||||||||||||||||||| || ||| ||||||||||    
T  34159012 atatagacaaaacacctaaaaataaacatcataaaagacattcatacgcacaacacct 34158955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 320 - 478
Target Start/End: Original strand, 675 - 834
Alignment:
Q  320 gtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcc 419  Q
    |||||| ||||||||||||||| |||||||| ||||| |  ||||| || |||||||||| |||||||||||  |||||||||||||||||| ||   |     
T  675 gtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagacatccctacacacaacacctagccaaatcg 774  T
Q  420 taccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    |||||||||||||||||| |||||||  || |||||||||||||||||| ||||||||||    
T  775 taccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagac 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 454
Target Start/End: Original strand, 45354589 - 45354722
Alignment:
Q  321 tgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcct 420  Q
    |||||||||||||||||| || ||  || | ||| |||| ||| |||| ||||||||||||||||||||||| |||||||||| ||||||| ||   |||    
T  45354589 tgatttagagaatacaaattaaaggtgttgtatagaggcggaatatccgaaaataaacatcataaaagacacccctacacacagcacctagccaaaccct 45354688  T
Q  421 accttcaacacccatgacgacaacacccacaaaa 454  Q
    |||||||||||| || | ||||||||||||||||    
T  45354689 accttcaacacctattaggacaacacccacaaaa 45354722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 27399323 - 27399228
Alignment:
Q  382 ataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacag 476  Q
    ||||||||||| | |||||||||||| ||| ||    | ||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||    
T  27399323 ataaaagacacacttacacacaacacttagccaagctcgaccttcaacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacag 27399228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 823141 - 823233
Alignment:
Q  384 aaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaaca 475  Q
    ||||||||| | |||||||||| |||| |||   |||||||||||||||||||| |||| |||||| |||||| ||| ||||||| |||||||    
T  823141 aaaagacacccttacacacaacccctaatcaacccctaccttcaacacccatgaggacatcacccaccaaaattaacttcaccacctaaaaca 823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 465
Target Start/End: Complemental strand, 16266057 - 16266009
Alignment:
Q  418 cctaccttcaacacccatgacgacaacaccca-caaaataaacatcacc 465  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  16266057 cctaccttcaacacccatgaggacaacatccaccaaaataaacatcacc 16266009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 25594289 - 25594345
Alignment:
Q  420 taccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaaca 475  Q
    |||||||||||||||||| ||||||||||| || |||||||||||| || |||||||    
T  25594289 taccttcaacacccatgaggacaacacccaccacaataaacatcactacctaaaaca 25594345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 478
Target Start/End: Original strand, 13017969 - 13018126
Alignment:
Q  321 tgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcct 420  Q
    ||||| ||||| |||||| || || ||| | |||||| |  ||||||||||| ||||||||||||||||||| |||||||| | |||||| |||    ||    
T  13017969 tgattcagagactacaaattaaaggcgttgtatatagacgaaacatccaaaa-taaacatcataaaagacacccctacacataccacctaatcaaactct 13018067  T
Q  421 accttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    ||||| ||||   |||| |||| || ||| |||||| ||| ||||||| ||||||||||    
T  13018068 acctttaacaataatgaggacatcatccaccaaaattaacttcaccacctaaaacagac 13018126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 319 - 478
Target Start/End: Original strand, 17278141 - 17278301
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgc 418  Q
    ||||||| ||||||||||| ||| || ||||| |||||||| ||||| || |||||||||||||||||||||||   |  |||||| | |||| ||   |    
T  17278141 ggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaagacaccattgaacacaagatctagccaaacc 17278240  T
Q  419 ctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    ||||||||||||||||||  ||||||||||| |||||||||||| ||||| |||| |||||    
T  17278241 ctaccttcaacacccatgcggacaacacccaccaaaataaacattaccacctaaatcagac 17278301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 33968326 - 33968423
Alignment:
Q  369 aaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcacc 465  Q
    |||||||||||   |||||||||| |||||||||| ||||||| ||   |||||||||||||||| ||| ||||||||||| ||||||| ||||||||    
T  33968326 aaaaataaacactgtaaaagacacccctacacacatcacctagccaaaccctaccttcaacacccttgaggacaacacccaccaaaatagacatcacc 33968423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 478
Target Start/End: Original strand, 32935031 - 32935142
Alignment:
Q  369 aaaaataaacatcataaaagacactcctacacacaacacctagtcatt-gcctaccttcaacacccatgacgacaacaccca-caaaataaacatcacca 466  Q
    ||||| ||||| |||||||||||| | |||||||||| || || |||| || |||||||||||| || || ||||||||||| ||||||||||| |||||    
T  32935031 aaaaacaaacaccataaaagacacccttacacacaacgccgagccattagcttaccttcaacactcacgaggacaacacccaccaaaataaacaccacca 32935130  T
Q  467 cttaaaacagac 478  Q
    | ||||| ||||    
T  32935131 cctaaaatagac 32935142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 477
Target Start/End: Complemental strand, 8731340 - 8731182
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgc 418  Q
    ||||||| ||||||||||||| | || || || |||||| |  |||| ||||||||||||| || ||||||| | |||||||||||||||||||||   |    
T  8731340 ggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacca-aaaagaccc-cctacacacaacacctagtcaaacc 8731243  T
Q  419 ctaccttcaacacccatgacgac-aacaccca-caaaataaacatcaccacttaaaacaga 477  Q
    | ||||||||||||| ||| ||| |||||||| |||||||||||||||||| |||||||||    
T  8731242 ccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacaga 8731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 24071942 - 24072055
Alignment:
Q  321 tgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcct 420  Q
    ||||| ||| |||||||||||  | || || |||||||| ||||| || |||||||||||||||||||||||  ||||||  ||||||||||||   |||    
T  24071942 tgattcagataatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaagacacctctacacgtaacacctagtcaaaccct 24072041  T
Q  421 accttcaacaccca 434  Q
    ||||||||||||||    
T  24072042 accttcaacaccca 24072055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 478
Target Start/End: Original strand, 39183873 - 39184003
Alignment:
Q  347 gtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacac 446  Q
    |||| |||||| |||| || || ||||||| ||||||||| ||||| ||| | || ||||| ||||||   |||||||||||||||| ||| ||||||||    
T  39183873 gtcgtatatagacagagcacccgaaaataaccatcataaa-gacacccctcctcataacacttagtcaac-cctaccttcaacacccttgaggacaacac 39183970  T
Q  447 ccac-aaaataaacatcaccacttaaaacagac 478  Q
    |||| |||||||| |||||||| ||||||||||    
T  39183971 ccactaaaataaagatcaccacctaaaacagac 39184003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 478
Target Start/End: Original strand, 17853763 - 17853871
Alignment:
Q  371 aaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccactt 469  Q
    ||||||||| ||||||| |||  | ||| |||||||||||| ||   |||||||||| ||||||||| || |||||||| ||||||||||||||||   |    
T  17853763 aaataaacaccataaaaaacatccatactcacaacacctagccaaaccctaccttcaccacccatgaggaaaacacccaccaaaataaacatcaccttct 17853862  T
Q  470 aaaacagac 478  Q
    |||||||||    
T  17853863 aaaacagac 17853871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 25657807 - 25657889
Alignment:
Q  327 agagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacaccta 410  Q
    ||||| ||||||||| || || || |||||||||||||| || |||||||||| ||||||| |||||| || ||||||||||||    
T  25657807 agagattacaaactacaggcgccgtatataggcagaaca-cctaaaataaacaccataaaaaacactcatatacacaacaccta 25657889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 472
Target Start/End: Original strand, 25184800 - 25184953
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgc 418  Q
    ||||||| ||||| ||||||||| | |||||| |||||||  ||||| || ||  |||||| |||||||||||  | ||||||||| |||||| ||   |    
T  25184800 ggtgattcagagagtacaaactaaaaacgtcgtatataggtggaacacccgaag-taaacaccataaaagacatccatacacacaatacctagccaagcc 25184898  T
Q  419 ctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaa 472  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  25184899 ctaccttcaacactcatgaggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 477
Target Start/End: Complemental strand, 15907103 - 15906952
Alignment:
Q  327 agagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttc 426  Q
    ||||||||||||||| || | ||| |||||||| || ||||| | |||||||  || | || |||| |||||||||||||||||| |    |||||||||    
T  15907103 agagaatacaaactaaaggcatcgtatataggcggagcatccgacaataaactccaaacaaaacacccctacacacaacacctagcccaaccctaccttc 15907004  T
Q  427 aacacccatgacgacaacacccaca-aaataaacatcaccacttaaaacaga 477  Q
    ||||||||||| ||| ||||||||| | ||| ||||||||||  ||||||||    
T  15907003 aacacccatgaggaccacacccacagagatagacatcaccaccaaaaacaga 15906952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 478
Target Start/End: Original strand, 9831690 - 9831840
Alignment:
Q  327 agagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttc 426  Q
    ||||||||||||||| |||||||| |||||||| || || || |||||||||  |||| || |||| |||  ||||||||||||  |    | |||||||    
T  9831690 agagaatacaaactaaagacgtcgtatataggccgaccacccgaaaataaactccatacaaaacacccct--acacaacacctaacccaaccataccttc 9831787  T
Q  427 aacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 478  Q
    |||||||||||  |||||| ||| |||||||||||| ||||| |||| |||||    
T  9831788 aacacccatgaaaacaacatccatcaaaataaacattaccacctaaagcagac 9831840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 478
Target Start/End: Complemental strand, 1760996 - 1760889
Alignment:
Q  373 ataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccc--acaaaataaacatcaccactta 470  Q
    ||||||||||||||||||| || ||| ||||||||||| |||   ||| |||||||||| ||||  ||||||||||   |||||||||  | ||||| ||    
T  1760996 ataaacatcataaaagacattcatacgcacaacacctaatcaaaccctgccttcaacactcatgcggacaacaccccatcaaaataaatttgaccaccta 1760897  T
Q  471 aaacagac 478  Q
    ||||||||    
T  1760896 aaacagac 1760889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 17720387 - 17720439
Alignment:
Q  320 gtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaa 372  Q
    ||||||||| |||||||||||| || || || |||||||||||||| ||||||    
T  17720387 gtgatttagtgaatacaaactaaaggcgccgtatataggcagaacacccaaaa 17720439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 411
Target Start/End: Complemental strand, 46487682 - 46487590
Alignment:
Q  319 ggtgatttagagaatacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctag 411  Q
    ||||||||||||||||||||||| || | ||| |||||||| |||||||| ||||||||||  ||||| | ||| ||||||||||||||||||    
T  46487682 ggtgatttagagaatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacacaataaatggcacccctacacacaacacctag 46487590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 19814930 - 19814971
Alignment:
Q  352 atataggcagaacatccaaaaataaacatcataaaagacact 393  Q
    ||||| |||||||| |||||||||||||||||||||||||||    
T  19814930 atataagcagaacacccaaaaataaacatcataaaagacact 19814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 49747917 - 49747857
Alignment:
Q  332 atacaaactatagacgtcgaatataggcagaacatccaaaaataaacatcataaaagacac 392  Q
    |||||||| | |||| ||| ||||| || ||||||||||||||||||| ||||||| ||||    
T  49747917 atacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacac 49747857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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