View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_23 (Length: 434)
Name: NF8969_low_23
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 42789311 - 42788907
Alignment:
| Q |
17 |
agcagagattctcgaaactcgtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttgga |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789311 |
agcagagattcttgaaactcgtcgatacaaagatgcagagagagttcacattgtctatagtctctcaaaagatctcggtctaccaggtttcagagttgga |
42789212 |
T |
|
| Q |
117 |
acaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacacagcaatttttggctaatatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42789211 |
acaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacacaacaatttttggctaatatgc |
42789112 |
T |
|
| Q |
217 |
tatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789111 |
tatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaat |
42789012 |
T |
|
| Q |
317 |
tgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789011 |
tgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatatt |
42788912 |
T |
|
| Q |
417 |
gtttt |
421 |
Q |
| |
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||||| |
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| T |
42788911 |
gtttt |
42788907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 42798849 - 42798445
Alignment:
| Q |
17 |
agcagagattctcgaaactcgtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttgga |
116 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798849 |
agcagagattcttgaaactcgtcgatacaaagatgcagagagagttcacattgtctatagtctctcaaaagatctcggtctaccaggtttcagagttgga |
42798750 |
T |
|
| Q |
117 |
acaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacacagcaatttttggctaatatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42798749 |
acaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacacaacaatttttggctaatatgc |
42798650 |
T |
|
| Q |
217 |
tatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798649 |
tatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaat |
42798550 |
T |
|
| Q |
317 |
tgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798549 |
tgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatatt |
42798450 |
T |
|
| Q |
417 |
gtttt |
421 |
Q |
| |
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||||| |
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| T |
42798449 |
gtttt |
42798445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 34566980 - 34566633
Alignment:
| Q |
21 |
gagattctcgaaactcgtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaa |
120 |
Q |
| |
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|||||||| ||| |||||| ||||||||| || || ||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
34566980 |
gagattcttgaatctcgtcaatacaaagacgcggaaagatgtcacattgtttatagtctttctaaagatctcggtctaccaggtttcagagtcggaacaa |
34566881 |
T |
|
| Q |
121 |
tttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacacagcaatttttggctaatatgctatc |
220 |
Q |
| |
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||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||| || ||| | || |
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| T |
34566880 |
tttattcctacaacgataaagttgttacaacagcacgaagaatgtcgagttttaccttaatatcttcacaaacacaacatcttttagcatcaatgttgtc |
34566781 |
T |
|
| Q |
221 |
agacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgag |
320 |
Q |
| |
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||| ||| || ||||| || || || || | ||||| |||||||| | ||| |||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34566780 |
agatgaaagtttcactgataattacatcaaggtcaatagagaaagattaaggaaaagatatgaaatgatcattgaaggtttgaaaagtgctggaattgaa |
34566681 |
T |
|
| Q |
321 |
tgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtcca |
368 |
Q |
| |
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|| |||||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
34566680 |
tgcttgaaaggtaatgcagggttgttttgttggatgaatatgagtcca |
34566633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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