View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_26 (Length: 401)
Name: NF8969_low_26
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 3794274 - 3794454
Alignment:
| Q |
12 |
gacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagtttgccatgcctagaccgttgactgctccctacatttagccaggggcagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
3794274 |
gacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagcctgccatgtctggaccgttgactgctccctacatttagccaggggcagc |
3794373 |
T |
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| Q |
112 |
tcctggctatggccttggcaccttttataatatatttacctgcgt----------cttcattgttccaagaaaaacaattc |
182 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3794374 |
tcctcgctatggccttggcaccttttataatatatttacctgcgtgccttcagcccttcattgttccaagaaaaacaattc |
3794454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 7783331 - 7783195
Alignment:
| Q |
12 |
gacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagtttgccatgcctagaccgttgactgctccctacatttagccaggggcagc |
111 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||||||||||| | |||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
7783331 |
gacatcaccactgcaaaagcaaatggagattagatcattctcctgcaaagcctaccatgcctgcaacgttgactgctccctaaatttagccaggggcagc |
7783232 |
T |
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| Q |
112 |
tcctggctatggccttggcaccttttataatatattt |
148 |
Q |
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| T |
7783231 |
tcttggctttggccttggcatcttttatactatattt |
7783195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 7783002 - 7782961
Alignment:
| Q |
333 |
ctacaacagtgttgtacccatttgcaaatctgatttcaattc |
374 |
Q |
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| T |
7783002 |
ctacaatagtgttgtacccatttgcaaatctgatttcaattc |
7782961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 3794478 - 3794512
Alignment:
| Q |
218 |
cccaatacattcatctcctacttttcttatttggt |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3794478 |
cccaatacattcatctcctacttttcttatttggt |
3794512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 363
Target Start/End: Original strand, 3794593 - 3794623
Alignment:
| Q |
333 |
ctacaacagtgttgtacccatttgcaaatct |
363 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3794593 |
ctacaacagtgttgtacccatttgcaaatct |
3794623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 6660967 - 6660787
Alignment:
| Q |
12 |
gacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagtttgccatgcctagaccgttgactgctccctacatttagccaggggcagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||| |
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| T |
6660967 |
gacatcaccactgcaaaagcaaatagagattagacctttctcttgcaaagcctgccatgtctggactgttgactgctccctacatttagccaggggcagc |
6660868 |
T |
|
| Q |
112 |
tcctggctatggccttggcaccttttataatatatttacctgcgt----------cttcattgttccaagaaaaacaattc |
182 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6660867 |
tcctggctatggccttgacaccttttataatatatttacctgcgtgccttcagcccttcattgttccaagaaaaacaattc |
6660787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 6660751 - 6660717
Alignment:
| Q |
218 |
cccaatacattcatctcctacttttcttatttggt |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6660751 |
cccaatacattcatctcctacttttcttatttggt |
6660717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 6660636 - 6660606
Alignment:
| Q |
333 |
ctacaacagtgttgtacccatttgcaaatct |
363 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6660636 |
ctacaacagtgttgtacccatttgcaaatct |
6660606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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