View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_27 (Length: 396)
Name: NF8969_low_27
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 35939734 - 35940104
Alignment:
| Q |
9 |
ttataaatgagtataaaatggtttgtattttaaaatannnnnnnctaaaatgagaaaagtggacatacactcaagcatttgccgcaagaatctctgcctg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35939734 |
ttataaatgagtataaaatggtttgtattttaaaatatttttttctaaaatgagaaaagtggacatacagtcaagcatttgccgcaagaatctctgcctg |
35939833 |
T |
|
| Q |
109 |
ttggcccagctggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggttggttggcatcccaggtagcacagtatacactggcagtgtt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35939834 |
ttggcccagctggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggctggttggcatcccaggtagcacagtatacactggcagtgtt |
35939933 |
T |
|
| Q |
209 |
gtagtcccagttaatattctgagggttgtaattattgtatgttgcccttacgttgtttgcactctgaccactcactaacatcgttcctacaaggaaacac |
308 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35939934 |
gtagtcccagttaatattctgagggttgtaattattgtatgttgcccttacgttgtttgcactctgaccactcactaacatcgttcccacaaggaaacac |
35940033 |
T |
|
| Q |
309 |
aataccaacaagcttaactttctctgcgtgttttccattttctcaatttttgtgtttcattgtagaggttt |
379 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940034 |
aataccaacaagcttaactttctctgtgtgttttccattttctcaatttttgtgtttcattgtagaggttt |
35940104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 53 - 374
Target Start/End: Original strand, 35953388 - 35953710
Alignment:
| Q |
53 |
ctaaaatgagaaaagtggacatacactcaagcatttgccgcaagaatctctgcc-tgttggcccagctggtccacaaaaggcagtccaaccatatttgct |
151 |
Q |
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| T |
35953388 |
ctaaaatgagtaaagtggtcataccctcaagcacttgccgcaagagtctctgccatgagggccctgg-ggtccacaaaaggcagtccagccatacttttg |
35953486 |
T |
|
| Q |
152 |
acgccatgacaagggttggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatattctgagggttgtaattattgtatgtt |
251 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
35953487 |
acgccatgacaagggctggttggcatcccatgtagcacagtaaacactggcagtgttgtagttccagttaatattctgagggttgtaaaggtggtatgtt |
35953586 |
T |
|
| Q |
252 |
gcccttacgttgtttgcactctgaccactcactaacatcgttcctacaaggaaacacaataccaacaagcttaactttctctgcgtgttttccattttct |
351 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| || ||||||| ||| | ||||||||| |
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| T |
35953587 |
gccctaacgttgtttgcactctgaccattcactaacatcgttcccacaaggaaacacaaaaccaacaagctcaaagttctctgtgtgctcaccattttct |
35953686 |
T |
|
| Q |
352 |
caatttt-tgtgtttcattgtaga |
374 |
Q |
| |
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| |||| |||||||||||||||| |
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|
| T |
35953687 |
cttttttgtgtgtttcattgtaga |
35953710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 120 - 352
Target Start/End: Original strand, 35947917 - 35948149
Alignment:
| Q |
120 |
ggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggttggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||| | |
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| T |
35947917 |
ggtccacaaaaggcagtccaaccatactttttacgccattccaagggctggtttgcatcccaggtagcacagtatacactggctctgttgtaatcccaat |
35948016 |
T |
|
| Q |
220 |
taatattctgagggttgtaattattgtatgttgcccttacgttgtttgcactctgaccactcactaacatcgttcctacaaggaaacacaataccaacaa |
319 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| |||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
35948017 |
taatattctgagggttgtaaaggtggtacgttgaccttacaccgtttgcactctgaccactcactaacatcattcccacaaggaaacaaaataccaacaa |
35948116 |
T |
|
| Q |
320 |
gcttaactttctctgcgtgttttccattttctc |
352 |
Q |
| |
|
||| ||||||||||| ||| | ||||||||||| |
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|
| T |
35948117 |
gctcaactttctctgtgtgctctccattttctc |
35948149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 35929119 - 35929180
Alignment:
| Q |
120 |
ggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggttggttggcatccca |
181 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
35929119 |
ggtccacagaaggcagtccaaccatatttgctacgccatgacaagggctggtctgcatccca |
35929180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 31175100 - 31175148
Alignment:
| Q |
120 |
ggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggtt |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
31175100 |
ggtccacaaaaggcagcccaaccatatttgcttcgccatgacaatggtt |
31175148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 31206440 - 31206480
Alignment:
| Q |
123 |
ccacaaaaggcagtccaaccatatttgctacgccatgacaa |
163 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
31206440 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaa |
31206480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 47583404 - 47583367
Alignment:
| Q |
123 |
ccacaaaaggcagtccaaccatatttgctacgccatga |
160 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||| |
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| T |
47583404 |
ccacaaaaagcagtccaaccatacttgctacgccatga |
47583367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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