View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_28 (Length: 390)
Name: NF8969_low_28
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 13148131 - 13147773
Alignment:
| Q |
17 |
agagatgaacaaaaggaagaaggaaggtaaaggttgtaataacctgtgatatgctttataatgttcttgaatttcaactgatgaactctgagtttgaaat |
116 |
Q |
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| T |
13148131 |
agagatgaacaaaaggaagaaggaaggtaaaggttgtaataacctgtgatatgctttataatgttcttgaatttcaactgatgaactctgagtttgaaat |
13148032 |
T |
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| Q |
117 |
ttttccatcaagttcttcaattaatttacaggaaagcaagcatatattgcaaagtttcgtattctctcaaaatgtgcatgagttacatgaataaactaga |
216 |
Q |
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| T |
13148031 |
ttttccatcaagttcttcaattaatttacaggaaagcaagcatatattgcaaagtttcgtattctctcaaaatgtgcatgagttacatgaataaactaga |
13147932 |
T |
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| Q |
217 |
atatctcaagatgaatcgagtgagatcggtatgtttttgagaagacaaaaagtaaacaaatttaataaatctcaacaagtcgaaattgagcataatatgg |
316 |
Q |
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| T |
13147931 |
atatctcaagatgaatcgagtgagatcggtatgtttttgagaagacaaaaggtaaataaatttaataaatctcaacaagtcgaaattgagcataatatgg |
13147832 |
T |
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| Q |
317 |
aaatcgaattattaagattccttttgcaattgtaatccggaaaatgttgatgaagaaat |
375 |
Q |
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| T |
13147831 |
aaatcgaattattaagattccttttgcaattgtaatccggaaaatgttgatgaagaaat |
13147773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 13101373 - 13101309
Alignment:
| Q |
80 |
ttcttgaatttcaactgatgaactctgagtttgaaatttttccatcaagttcttcaattaattta |
144 |
Q |
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| T |
13101373 |
ttcttgaatctcaactgatgaactttgactttgaagtttttcgatcaaataattcaattagttta |
13101309 |
T |
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